Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47836 * 111.00136 * 2 1 4 4 C 1.54904 * 104.79970 * 146.36705 * 3 2 1 5 5 C 1.55400 * 101.73960 * 323.02060 * 4 3 2 6 6 C 1.47438 * 110.99853 * 120.84836 * 2 1 3 7 7 H 1.09003 * 109.89018 * 117.17490 * 6 2 1 8 8 C 1.52997 * 109.89358 * 356.14055 * 6 2 1 9 9 C 1.53001 * 109.47371 * 175.25747 * 8 6 2 10 10 H 1.09002 * 109.46747 * 54.82120 * 9 8 6 11 11 O 1.42902 * 109.46979 * 294.82322 * 9 8 6 12 12 C 1.50700 * 109.46900 * 174.82183 * 9 8 6 13 13 H 1.07997 * 120.00558 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99296 * 180.02562 * 12 9 8 15 15 N 1.31522 * 119.99211 * 180.02562 * 14 12 9 16 16 Si 1.86794 * 120.00533 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.46964 * 89.99750 * 16 14 12 18 18 H 1.48499 * 109.47255 * 210.00112 * 16 14 12 19 19 H 1.48501 * 109.47093 * 329.99955 * 16 14 12 20 20 H 1.09004 * 109.46820 * 297.36463 * 1 2 3 21 21 H 1.08999 * 109.47368 * 57.36352 * 1 2 3 22 22 H 1.09003 * 109.47446 * 177.36891 * 1 2 3 23 23 H 1.09004 * 110.37480 * 265.19698 * 3 2 1 24 24 H 1.09002 * 110.37338 * 27.42292 * 3 2 1 25 25 H 1.09001 * 110.99174 * 81.01415 * 4 3 2 26 26 H 1.08997 * 110.99315 * 204.80562 * 4 3 2 27 27 H 1.08997 * 110.67699 * 277.17559 * 5 4 3 28 28 H 1.08995 * 110.84791 * 153.86274 * 5 4 3 29 29 H 1.09004 * 109.46691 * 55.26206 * 8 6 2 30 30 H 1.09001 * 109.47430 * 295.26347 * 8 6 2 31 31 H 0.96692 * 114.00141 * 295.16583 * 11 9 8 32 32 H 0.97005 * 119.99404 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 0.8295 5 6 2.9183 0.2788 1.9328 6 6 1.9974 -0.7058 1.1817 7 1 2.5673 -1.5802 0.8674 8 6 0.8439 -1.1356 2.0903 9 6 1.3918 -1.9683 3.2510 10 1 2.1684 -1.4043 3.7678 11 8 1.9437 -3.1855 2.7452 12 6 0.2759 -2.2843 4.2132 13 1 -0.7242 -1.9274 4.0164 14 6 0.5318 -3.0291 5.3450 15 7 -0.4422 -3.3053 6.1845 16 14 2.2617 -3.6459 5.6859 17 1 2.9989 -2.6351 6.4860 18 1 2.1923 -4.9216 6.4428 19 1 2.9693 -3.8712 4.3999 20 1 -0.3633 0.4724 0.9127 21 1 -0.3634 0.5542 -0.8654 22 1 -0.3634 -1.0266 -0.0472 23 1 2.2148 1.7038 -1.0183 24 1 1.2881 2.0595 0.4706 25 1 4.1302 0.9280 0.2242 26 1 3.5499 2.2720 1.2634 27 1 2.3784 0.7705 2.7420 28 1 3.8019 -0.2336 2.3132 29 1 0.1339 -1.7330 1.5181 30 1 0.3415 -0.2515 2.4827 31 1 1.2928 -3.7728 2.3372 32 1 -0.2623 -3.8296 6.9805 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535774990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = -71.426789 kcal Electronic energy + Delta-G solvation = -13434.169307 eV Core-core repulsion = 11200.578040 eV Total energy + Delta-G solvation = -2233.591267 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.50208 -37.79371 -34.43316 -33.09733 -32.55422 -29.30916 -26.49767 -26.28932 -23.00596 -21.91903 -20.51515 -19.11093 -17.35998 -16.88301 -16.42172 -16.12829 -15.87474 -15.08360 -14.87004 -14.38157 -14.03091 -13.55164 -13.48179 -13.25278 -12.81388 -12.38824 -12.23452 -12.19160 -11.97586 -11.79653 -11.55852 -11.46501 -10.98553 -10.83765 -10.18195 -9.16506 -8.37337 -6.52078 1.38257 1.43992 1.73621 2.42012 3.00506 3.11447 3.75071 3.81212 3.90412 4.11369 4.37505 4.40671 4.43052 4.56709 4.63807 4.70353 4.70932 4.94589 4.98189 5.03824 5.10056 5.17780 5.26943 5.47735 5.50499 5.57216 6.04817 6.11227 6.17002 6.60787 7.17415 7.32382 8.77056 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051450 B = 0.010160 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.082538 B = 2755.228771 C = 2994.270304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.037 3.963 4 C -0.121 4.121 5 C -0.141 4.141 6 C 0.077 3.923 7 H 0.079 0.921 8 C -0.132 4.132 9 C 0.204 3.796 10 H 0.052 0.948 11 O -0.583 6.583 12 C -0.568 4.568 13 H 0.032 0.968 14 C 0.025 3.975 15 N -0.941 5.941 16 Si 0.938 3.062 17 H -0.284 1.284 18 H -0.297 1.297 19 H -0.202 1.202 20 H 0.022 0.978 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.369 0.631 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 7.676 -11.563 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.090 4.090 4 C -0.159 4.159 5 C -0.180 4.180 6 C -0.031 4.031 7 H 0.097 0.903 8 C -0.170 4.170 9 C 0.145 3.855 10 H 0.070 0.930 11 O -0.390 6.390 12 C -0.605 4.605 13 H 0.051 0.949 14 C -0.174 4.174 15 N -0.580 5.580 16 Si 0.761 3.239 17 H -0.211 1.211 18 H -0.224 1.224 19 H -0.124 1.124 20 H 0.041 0.959 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.111 0.889 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.216 0.784 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.536 7.614 -11.680 15.849 hybrid contribution -0.894 -0.241 1.412 1.688 sum 6.643 7.373 -10.268 14.280 Atomic orbital electron populations 1.22553 0.87899 1.02098 1.00444 1.63801 1.08320 1.14940 1.39282 1.23160 0.95798 0.88932 1.01134 1.22732 0.97530 0.99378 0.96228 1.22919 0.99584 0.97280 0.98224 1.22350 0.95010 0.97120 0.88583 0.90294 1.22494 0.97889 0.99539 0.97103 1.19546 0.92140 0.83286 0.90488 0.93047 1.86543 1.40310 1.32667 1.79490 1.21932 0.96162 1.34979 1.07442 0.94932 1.25932 1.01617 0.94891 0.94990 1.70098 1.34921 1.39763 1.13248 0.86004 0.80626 0.76966 0.80258 1.21060 1.22389 1.12382 0.95913 0.90241 0.91769 0.88884 0.93727 0.90063 0.89295 0.92384 0.90908 0.92052 0.93205 0.78370 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.25 127.69 1.05 1.56 16 2 N -0.54 -15.58 5.44 -886.54 -4.83 -20.40 16 3 C 0.04 0.87 6.73 86.77 0.58 1.46 16 4 C -0.12 -2.72 7.08 32.07 0.23 -2.50 16 5 C -0.14 -4.17 5.52 31.87 0.18 -4.00 16 6 C 0.08 2.53 3.40 45.26 0.15 2.69 16 7 H 0.08 2.77 7.71 -2.39 -0.02 2.75 16 8 C -0.13 -5.08 2.97 30.59 0.09 -4.99 16 9 C 0.20 9.31 2.23 29.85 0.07 9.37 16 10 H 0.05 2.40 6.74 -2.39 -0.02 2.38 16 11 O -0.58 -25.29 9.62 -148.98 -1.43 -26.72 16 12 C -0.57 -32.07 9.30 25.60 0.24 -31.83 16 13 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 14 C 0.03 1.46 5.47 84.66 0.46 1.93 16 15 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 16 Si 0.94 45.11 26.99 68.60 1.85 46.96 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 19 H -0.20 -9.20 5.31 99.48 0.53 -8.67 16 20 H 0.02 0.67 6.52 -2.39 -0.02 0.65 16 21 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.06 1.84 6.73 -2.39 -0.02 1.83 16 23 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.04 1.04 7.80 -2.39 -0.02 1.02 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.83 7.77 -2.39 -0.02 1.81 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 2.37 6.33 -2.38 -0.02 2.36 16 30 H 0.05 2.01 6.89 -2.39 -0.02 1.99 16 31 H 0.37 14.44 9.02 -74.06 -0.67 13.77 16 32 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -64.74 249.02 -0.81 -65.54 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.25 Total: 19.55 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 3.05 Total: -26.31 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -4.53 Total: -79.01 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.43 Total: -26.72 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.85 Total: 46.96 kcal Total: -64.74 -0.81 -65.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535774990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.882 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds