Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48541 * 111.00143 * 2 1 4 4 C 1.54939 * 103.22605 * 159.72084 * 3 2 1 5 5 C 1.54601 * 102.92312 * 322.58827 * 4 3 2 6 6 C 1.47905 * 111.00278 * 117.39561 * 2 1 3 7 7 H 1.08996 * 110.08097 * 333.60135 * 6 2 1 8 8 C 1.53004 * 109.91293 * 94.80007 * 6 2 1 9 9 C 1.52987 * 109.47459 * 292.16606 * 8 6 2 10 10 H 1.09003 * 109.47460 * 58.26681 * 9 8 6 11 11 O 1.42898 * 109.47205 * 298.26326 * 9 8 6 12 12 C 1.50698 * 109.47320 * 178.26419 * 9 8 6 13 13 H 1.08006 * 120.00041 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00031 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00285 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 119.99757 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47251 * 59.99806 * 16 14 12 18 18 H 1.48496 * 109.46980 * 299.99458 * 16 14 12 19 19 H 1.48503 * 109.46777 * 179.97438 * 16 14 12 20 20 H 1.09004 * 109.47300 * 308.99567 * 1 2 3 21 21 H 1.08995 * 109.47102 * 68.99120 * 1 2 3 22 22 H 1.08995 * 109.47254 * 188.99918 * 1 2 3 23 23 H 1.08998 * 110.66508 * 41.29062 * 3 2 1 24 24 H 1.08990 * 110.66479 * 278.15759 * 3 2 1 25 25 H 1.09002 * 110.72339 * 204.22843 * 4 3 2 26 26 H 1.09000 * 110.87422 * 81.01657 * 4 3 2 27 27 H 1.09001 * 110.30665 * 263.04210 * 5 4 3 28 28 H 1.09002 * 110.38957 * 140.91816 * 5 4 3 29 29 H 1.09001 * 109.46618 * 172.16065 * 8 6 2 30 30 H 1.08997 * 109.46931 * 52.17161 * 8 6 2 31 31 H 0.96703 * 113.99967 * 299.99973 * 11 9 8 32 32 H 0.96996 * 119.99870 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2982 0.1053 1.5931 6 6 1.9990 -0.6353 1.2259 7 1 1.2771 -0.5432 2.0373 8 6 2.2982 -2.1121 0.9600 9 6 0.9864 -2.8648 0.7294 10 1 0.4543 -2.4187 -0.1109 11 8 0.1768 -2.7817 1.9040 12 6 1.2835 -4.3105 0.4254 13 1 2.3058 -4.6579 0.3996 14 6 0.2502 -5.1899 0.1801 15 7 -0.9947 -4.7670 0.2120 16 14 0.6185 -6.9822 -0.1961 17 1 1.3424 -7.5898 0.9493 18 1 1.4606 -7.0690 -1.4161 19 1 -0.6549 -7.7127 -0.4200 20 1 -0.3634 0.6467 0.7987 21 1 -0.3633 0.3684 -0.9593 22 1 -0.3633 -1.0150 0.1607 23 1 1.4237 2.0205 0.6730 24 1 2.0040 1.7977 -1.0095 25 1 3.8123 2.1352 0.9716 26 1 4.1140 0.8848 -0.2772 27 1 3.2136 0.5485 2.5853 28 1 4.1468 -0.5779 1.5557 29 1 2.8156 -2.5384 1.8194 30 1 2.9287 -2.2014 0.0754 31 1 0.5882 -3.1605 2.6929 32 1 -1.1860 -3.8365 0.4077 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535774994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = -61.033643 kcal Electronic energy + Delta-G solvation = -13470.261816 eV Core-core repulsion = 11237.121230 eV Total energy + Delta-G solvation = -2233.140586 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91501 -35.88509 -32.02833 -31.84829 -30.92934 -27.09144 -25.29462 -23.87435 -21.26592 -20.65146 -19.56546 -17.11396 -15.85832 -15.19119 -14.69116 -14.41622 -13.70582 -13.37109 -12.91140 -12.74989 -12.38340 -12.10155 -12.04181 -11.33792 -11.00145 -10.87719 -10.75862 -10.71550 -10.28338 -10.12566 -10.04089 -9.93488 -8.97614 -8.35953 -8.12362 -7.79208 -6.26777 -4.08259 3.45977 3.47692 3.66654 4.39549 4.57345 4.91038 4.98898 5.21280 5.42512 5.52127 5.66777 5.83780 5.86191 5.89856 5.97577 6.05572 6.11508 6.20116 6.26241 6.41638 6.50022 6.53003 6.78473 7.08417 7.38182 7.48356 7.74110 8.14021 8.45378 8.94963 9.19565 9.76386 11.12744 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057194 B = 0.009295 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.445343 B = 3011.580519 C = 3188.859690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.511 5.511 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.129 4.129 6 C 0.068 3.932 7 H 0.054 0.946 8 C -0.118 4.118 9 C 0.206 3.794 10 H 0.063 0.937 11 O -0.587 6.587 12 C -0.646 4.646 13 H 0.046 0.954 14 C 0.032 3.968 15 N -0.896 5.896 16 Si 1.065 2.935 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.283 1.283 20 H 0.019 0.981 21 H 0.059 0.941 22 H 0.093 0.907 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.351 0.649 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.320 9.718 1.716 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.235 5.235 3 C -0.096 4.096 4 C -0.160 4.160 5 C -0.168 4.168 6 C -0.041 4.041 7 H 0.073 0.927 8 C -0.156 4.156 9 C 0.149 3.851 10 H 0.080 0.920 11 O -0.391 6.391 12 C -0.684 4.684 13 H 0.065 0.935 14 C -0.176 4.176 15 N -0.531 5.531 16 Si 0.893 3.107 17 H -0.216 1.216 18 H -0.215 1.215 19 H -0.208 1.208 20 H 0.038 0.962 21 H 0.078 0.922 22 H 0.111 0.889 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.195 0.805 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.337 8.285 0.467 9.866 hybrid contribution 0.924 1.640 1.403 2.348 sum 6.260 9.925 1.869 11.883 Atomic orbital electron populations 1.22750 0.87693 1.03823 0.99697 1.64641 1.08321 1.13046 1.37524 1.23241 0.94984 0.90995 1.00372 1.22447 0.96736 0.98165 0.98658 1.22508 0.98611 0.97586 0.98062 1.22457 0.94675 0.96043 0.90878 0.92741 1.22179 1.00928 0.91829 1.00683 1.19679 0.86649 0.94194 0.84549 0.91951 1.86448 1.48994 1.83545 1.20152 1.22521 0.95024 0.95496 1.55342 0.93544 1.25761 0.93160 1.05337 0.93335 1.70642 1.19413 1.20122 1.42904 0.83633 0.75541 0.75100 0.76394 1.21561 1.21504 1.20817 0.96249 0.92214 0.88866 0.94424 0.90622 0.91749 0.90958 0.92222 0.91091 0.93109 0.91851 0.80464 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.09 60.06 0.55 0.70 16 2 N -0.51 -9.24 5.05 -230.79 -1.17 -10.41 16 3 C 0.03 0.46 6.56 -1.89 -0.01 0.45 16 4 C -0.12 -1.60 7.06 -24.87 -0.18 -1.77 16 5 C -0.13 -1.91 6.57 -25.37 -0.17 -2.08 16 6 C 0.07 1.23 2.53 -66.64 -0.17 1.07 16 7 H 0.05 1.06 7.22 -51.93 -0.37 0.68 16 8 C -0.12 -2.51 4.30 -26.74 -0.11 -2.62 16 9 C 0.21 5.23 1.70 -27.89 -0.05 5.18 16 10 H 0.06 1.72 5.51 -51.93 -0.29 1.44 16 11 O -0.59 -14.69 11.04 -35.23 -0.39 -15.08 16 12 C -0.65 -18.42 8.76 -34.44 -0.30 -18.73 16 13 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 14 C 0.03 0.94 5.40 -17.82 -0.10 0.84 16 15 N -0.90 -27.71 13.53 55.43 0.75 -26.96 16 16 Si 1.06 25.54 29.90 -169.99 -5.08 20.46 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H 0.02 0.32 7.92 -51.93 -0.41 -0.09 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.09 2.01 4.90 -51.93 -0.25 1.76 16 23 H 0.04 0.52 7.87 -51.93 -0.41 0.11 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.35 7.98 9.04 45.56 0.41 8.39 16 32 H 0.28 8.84 6.47 -40.82 -0.26 8.58 16 LS Contribution 254.16 15.07 3.83 3.83 Total: -1.00 -30.91 254.16 -6.74 -37.65 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.15 Total: 7.46 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -0.54 Total: -16.95 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.42 Total: -37.37 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.39 Total: -15.08 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.91 -6.74 -37.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535774994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.379 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds