Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48541 * 111.00143 * 2 1 4 4 C 1.54939 * 103.22605 * 159.72084 * 3 2 1 5 5 C 1.54601 * 102.92312 * 322.58827 * 4 3 2 6 6 C 1.47905 * 111.00278 * 117.39561 * 2 1 3 7 7 H 1.08996 * 110.08097 * 333.60135 * 6 2 1 8 8 C 1.53004 * 109.91293 * 94.80007 * 6 2 1 9 9 C 1.52987 * 109.47459 * 292.16606 * 8 6 2 10 10 H 1.09003 * 109.47460 * 58.26681 * 9 8 6 11 11 O 1.42898 * 109.47205 * 298.26326 * 9 8 6 12 12 C 1.50698 * 109.47320 * 178.26419 * 9 8 6 13 13 H 1.08006 * 120.00041 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00031 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00285 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 119.99757 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47251 * 59.99806 * 16 14 12 18 18 H 1.48496 * 109.46980 * 299.99458 * 16 14 12 19 19 H 1.48503 * 109.46777 * 179.97438 * 16 14 12 20 20 H 1.09004 * 109.47300 * 308.99567 * 1 2 3 21 21 H 1.08995 * 109.47102 * 68.99120 * 1 2 3 22 22 H 1.08995 * 109.47254 * 188.99918 * 1 2 3 23 23 H 1.08998 * 110.66508 * 41.29062 * 3 2 1 24 24 H 1.08990 * 110.66479 * 278.15759 * 3 2 1 25 25 H 1.09002 * 110.72339 * 204.22843 * 4 3 2 26 26 H 1.09000 * 110.87422 * 81.01657 * 4 3 2 27 27 H 1.09001 * 110.30665 * 263.04210 * 5 4 3 28 28 H 1.09002 * 110.38957 * 140.91816 * 5 4 3 29 29 H 1.09001 * 109.46618 * 172.16065 * 8 6 2 30 30 H 1.08997 * 109.46931 * 52.17161 * 8 6 2 31 31 H 0.96703 * 113.99967 * 299.99973 * 11 9 8 32 32 H 0.96996 * 119.99870 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2982 0.1053 1.5931 6 6 1.9990 -0.6353 1.2259 7 1 1.2771 -0.5432 2.0373 8 6 2.2982 -2.1121 0.9600 9 6 0.9864 -2.8648 0.7294 10 1 0.4543 -2.4187 -0.1109 11 8 0.1768 -2.7817 1.9040 12 6 1.2835 -4.3105 0.4254 13 1 2.3058 -4.6579 0.3996 14 6 0.2502 -5.1899 0.1801 15 7 -0.9947 -4.7670 0.2120 16 14 0.6185 -6.9822 -0.1961 17 1 1.3424 -7.5898 0.9493 18 1 1.4606 -7.0690 -1.4161 19 1 -0.6549 -7.7127 -0.4200 20 1 -0.3634 0.6467 0.7987 21 1 -0.3633 0.3684 -0.9593 22 1 -0.3633 -1.0150 0.1607 23 1 1.4237 2.0205 0.6730 24 1 2.0040 1.7977 -1.0095 25 1 3.8123 2.1352 0.9716 26 1 4.1140 0.8848 -0.2772 27 1 3.2136 0.5485 2.5853 28 1 4.1468 -0.5779 1.5557 29 1 2.8156 -2.5384 1.8194 30 1 2.9287 -2.2014 0.0754 31 1 0.5882 -3.1605 2.6929 32 1 -1.1860 -3.8365 0.4077 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535774994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = -84.318245 kcal Electronic energy + Delta-G solvation = -13471.271512 eV Core-core repulsion = 11237.121230 eV Total energy + Delta-G solvation = -2234.150282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.31574 -37.81648 -34.24137 -33.14391 -32.53939 -28.82348 -26.71258 -25.78571 -23.03723 -21.92787 -21.05907 -19.23259 -17.35325 -16.75523 -16.30976 -16.02816 -15.63583 -14.71254 -14.56555 -14.54513 -14.24099 -13.74814 -13.39542 -12.76340 -12.62212 -12.41747 -12.31259 -12.07514 -11.94773 -11.85945 -11.79061 -11.43630 -10.93514 -10.54834 -10.03223 -9.34265 -8.57627 -6.41461 1.51986 1.59994 1.79521 2.57450 3.07983 3.19324 3.69630 3.79640 4.04005 4.08151 4.30916 4.39056 4.46595 4.51954 4.57023 4.66028 4.79848 4.87959 4.95200 5.00232 5.08006 5.18029 5.26720 5.37763 5.67091 5.92060 6.06116 6.12760 6.20851 6.61252 7.21137 7.54255 8.79170 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057194 B = 0.009295 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.445343 B = 3011.580519 C = 3188.859690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.030 3.970 4 C -0.114 4.114 5 C -0.125 4.125 6 C 0.070 3.930 7 H 0.039 0.961 8 C -0.106 4.106 9 C 0.208 3.792 10 H 0.036 0.964 11 O -0.593 6.593 12 C -0.661 4.661 13 H 0.045 0.955 14 C -0.020 4.020 15 N -0.922 5.922 16 Si 1.114 2.886 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.285 1.285 20 H 0.030 0.970 21 H 0.072 0.928 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.360 0.640 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 10.458 1.951 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.097 4.097 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.038 4.038 7 H 0.057 0.943 8 C -0.144 4.144 9 C 0.151 3.849 10 H 0.054 0.946 11 O -0.398 6.398 12 C -0.698 4.698 13 H 0.063 0.937 14 C -0.221 4.221 15 N -0.558 5.558 16 Si 0.935 3.065 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.210 1.210 20 H 0.048 0.952 21 H 0.091 0.909 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.205 0.795 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.932 9.049 0.710 11.421 hybrid contribution 0.428 1.456 1.330 2.018 sum 7.360 10.505 2.040 12.988 Atomic orbital electron populations 1.22584 0.88370 1.01494 1.00782 1.64592 1.07932 1.15757 1.37473 1.23363 0.95814 0.88916 1.01597 1.22462 0.95735 0.98873 0.98136 1.22482 0.96310 0.97898 0.99650 1.22344 0.96395 0.94496 0.90588 0.94261 1.21985 0.98206 0.93918 1.00320 1.19525 0.88173 0.93193 0.83974 0.94618 1.86406 1.49398 1.83609 1.20422 1.22970 0.94918 0.97252 1.54683 0.93697 1.27279 0.92650 1.09651 0.92563 1.70781 1.20569 1.19244 1.45242 0.83003 0.75707 0.70260 0.77509 1.19435 1.19774 1.21021 0.95196 0.90924 0.92925 0.93388 0.89394 0.88595 0.90928 0.90343 0.90842 0.92489 0.92955 0.79463 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.09 127.69 1.16 1.76 16 2 N -0.53 -18.82 5.05 -884.09 -4.46 -23.28 16 3 C 0.03 0.80 6.56 86.65 0.57 1.37 16 4 C -0.11 -2.59 7.06 31.80 0.22 -2.36 16 5 C -0.13 -3.35 6.57 31.47 0.21 -3.14 16 6 C 0.07 2.50 2.53 45.06 0.11 2.62 16 7 H 0.04 1.51 7.22 -2.39 -0.02 1.49 16 8 C -0.11 -4.50 4.30 30.59 0.13 -4.37 16 9 C 0.21 10.82 1.70 29.84 0.05 10.87 16 10 H 0.04 2.07 5.51 -2.39 -0.01 2.06 16 11 O -0.59 -30.46 11.04 -148.98 -1.65 -32.10 16 12 C -0.66 -38.08 8.76 25.60 0.22 -37.85 16 13 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 14 C -0.02 -1.17 5.40 84.65 0.46 -0.71 16 15 N -0.92 -58.29 13.53 21.45 0.29 -58.00 16 16 Si 1.11 51.12 29.90 68.60 2.05 53.17 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H 0.03 1.00 7.92 -2.38 -0.02 0.98 16 21 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 22 H 0.05 2.37 4.90 -2.39 -0.01 2.35 16 23 H 0.05 1.17 7.87 -2.39 -0.02 1.15 16 24 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.93 7.69 -2.39 -0.02 1.92 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.36 16.63 9.04 -74.06 -0.67 15.96 16 32 H 0.27 17.33 6.47 -92.71 -0.60 16.73 16 Total: -1.00 -66.89 254.16 -0.03 -66.92 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.59 Total: 25.12 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 3.14 Total: -31.83 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -4.17 Total: -81.28 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.65 Total: -32.10 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Total: -66.89 -0.03 -66.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535774994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.398 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds