Wall clock time and date at job start Mon Mar 30 2020 02:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46849 * 110.99660 * 2 1 4 4 C 1.53040 * 109.52201 * 174.16058 * 3 2 1 5 5 C 1.53120 * 109.27972 * 59.17678 * 4 3 2 6 6 C 1.53118 * 109.16260 * 302.34581 * 5 4 3 7 7 C 1.46847 * 111.00350 * 235.78885 * 2 1 3 8 8 H 1.08996 * 109.45143 * 65.82754 * 7 2 1 9 9 C 1.53004 * 109.46002 * 305.85621 * 7 2 1 10 10 H 1.08996 * 109.47335 * 57.20351 * 9 7 2 11 11 O 1.42900 * 109.46813 * 297.20080 * 9 7 2 12 12 C 1.50699 * 109.46742 * 177.20391 * 9 7 2 13 13 H 1.08001 * 120.00400 * 356.65374 * 12 9 7 14 14 C 1.37880 * 119.99705 * 176.65093 * 12 9 7 15 15 N 1.31513 * 120.00162 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 120.00052 * 0.02562 * 14 12 9 17 17 H 1.48496 * 109.47148 * 269.99810 * 16 14 12 18 18 H 1.48501 * 109.46947 * 29.99895 * 16 14 12 19 19 H 1.48506 * 109.46931 * 149.99709 * 16 14 12 20 20 H 1.09005 * 109.46680 * 191.16714 * 1 2 3 21 21 H 1.09000 * 109.47399 * 311.16132 * 1 2 3 22 22 H 1.08998 * 109.47118 * 71.17224 * 1 2 3 23 23 H 1.08996 * 109.46332 * 54.14524 * 3 2 1 24 24 H 1.09003 * 109.46333 * 294.17407 * 3 2 1 25 25 H 1.08996 * 109.50559 * 299.23730 * 4 3 2 26 26 H 1.09001 * 109.53429 * 179.13503 * 4 3 2 27 27 H 1.08999 * 109.52493 * 182.43714 * 5 4 3 28 28 H 1.09003 * 109.57088 * 62.28031 * 5 4 3 29 29 H 1.08999 * 109.50285 * 297.71875 * 6 5 4 30 30 H 1.08999 * 109.54031 * 177.60995 * 6 5 4 31 31 H 0.96696 * 114.00320 * 300.00286 * 11 9 7 32 32 H 0.97002 * 120.00555 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8714 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7326 -0.2707 -2.0658 9 6 1.3892 -2.1755 -1.1203 10 1 0.3021 -2.1025 -1.1516 11 8 1.7868 -2.8545 0.0726 12 6 1.8759 -2.9441 -2.3218 13 1 2.5066 -2.4604 -3.0530 14 6 1.5160 -4.2647 -2.4874 15 7 1.9403 -4.9353 -3.5362 16 14 0.4246 -5.1011 -1.2230 17 1 1.2704 -5.7218 -0.1722 18 1 -0.4758 -4.0955 -0.6038 19 1 -0.3887 -6.1507 -1.8880 20 1 -0.3633 -1.0083 0.1990 21 1 -0.3634 0.6764 0.7737 22 1 -0.3633 0.3316 -0.9727 23 1 1.5633 1.9257 0.8329 24 1 1.7324 1.8609 -0.9376 25 1 3.7814 0.8569 1.0906 26 1 3.9103 2.3511 0.1314 27 1 5.1998 0.4716 -0.8905 28 1 3.8896 1.0351 -1.9564 29 1 3.7814 -1.3835 -0.0952 30 1 3.9099 -1.4309 -1.8703 31 1 2.7438 -2.9557 0.1671 32 1 1.6874 -5.8645 -3.6526 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535778097.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:25 Heat of formation + Delta-G solvation = -55.351540 kcal Electronic energy + Delta-G solvation = -13747.942220 eV Core-core repulsion = 11515.048028 eV Total energy + Delta-G solvation = -2232.894192 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.94433 -35.51021 -33.10465 -32.21779 -30.57599 -27.21214 -26.08874 -23.42420 -22.27053 -20.36900 -18.88707 -17.32476 -15.43832 -14.84803 -14.57576 -14.47790 -14.15540 -13.79901 -13.17379 -12.73969 -12.60211 -12.32376 -11.68676 -11.49726 -11.24822 -11.02323 -10.69047 -10.62983 -10.45641 -10.18986 -9.95552 -9.58890 -8.93865 -8.62139 -8.33883 -7.72759 -6.10916 -4.22020 3.48257 3.51649 3.66314 4.43248 4.53555 5.18150 5.20474 5.23490 5.34119 5.62225 5.74206 5.87222 5.87647 5.90197 5.93660 6.10509 6.16498 6.29598 6.30775 6.39934 6.42637 6.62812 6.79331 6.95173 7.32633 7.47438 7.66396 7.79449 8.30439 8.84384 9.08069 9.53044 10.99119 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047625 B = 0.012354 C = 0.010860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.780102 B = 2265.843475 C = 2577.726008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.533 5.533 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.105 4.105 7 C 0.070 3.930 8 H 0.036 0.964 9 C 0.200 3.800 10 H 0.059 0.941 11 O -0.575 6.575 12 C -0.560 4.560 13 H 0.075 0.925 14 C 0.080 3.920 15 N -0.894 5.894 16 Si 0.919 3.081 17 H -0.280 1.280 18 H -0.269 1.269 19 H -0.310 1.310 20 H 0.075 0.925 21 H 0.055 0.945 22 H 0.019 0.981 23 H 0.065 0.935 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.359 0.641 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 10.249 6.400 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.258 5.258 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.143 4.143 7 C -0.038 4.038 8 H 0.054 0.946 9 C 0.142 3.858 10 H 0.076 0.924 11 O -0.381 6.381 12 C -0.597 4.597 13 H 0.093 0.907 14 C -0.124 4.124 15 N -0.531 5.531 16 Si 0.750 3.250 17 H -0.206 1.206 18 H -0.194 1.194 19 H -0.239 1.239 20 H 0.094 0.906 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.206 0.794 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.544 9.859 6.829 12.005 hybrid contribution -0.241 -0.016 -0.431 0.494 sum 0.303 9.842 6.398 11.743 Atomic orbital electron populations 1.22343 0.88118 1.02629 0.99063 1.61928 1.07072 1.11825 1.44935 1.22063 0.95557 0.90339 0.99352 1.21560 0.94760 0.99289 0.99572 1.21617 0.99387 0.97057 0.97872 1.21526 0.94390 0.95549 1.02838 1.22273 0.95273 0.96483 0.89777 0.94561 1.19949 0.95346 0.86549 0.83955 0.92370 1.86331 1.27043 1.79553 1.45186 1.21548 1.33718 0.96849 1.07621 0.90720 1.25018 0.94980 0.97325 0.95082 1.69961 1.44822 1.10149 1.28210 0.86156 0.80430 0.78056 0.80391 1.20578 1.19433 1.23864 0.90606 0.92575 0.96219 0.91702 0.95822 0.91356 0.92478 0.92407 0.92801 0.91660 0.90211 0.79364 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 8.88 60.07 0.53 0.99 16 2 N -0.53 -9.60 4.66 -234.92 -1.09 -10.69 16 3 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 4 C -0.11 -1.57 6.09 -26.65 -0.16 -1.73 16 5 C -0.12 -1.83 6.00 -26.61 -0.16 -1.99 16 6 C -0.11 -1.92 4.79 -26.65 -0.13 -2.05 16 7 C 0.07 1.41 1.66 -67.72 -0.11 1.30 16 8 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 9 C 0.20 4.73 1.67 -27.88 -0.05 4.68 16 10 H 0.06 1.45 5.61 -51.93 -0.29 1.16 16 11 O -0.57 -13.45 10.55 -35.23 -0.37 -13.82 16 12 C -0.56 -15.39 8.59 -34.44 -0.30 -15.68 16 13 H 0.07 2.19 7.27 -52.49 -0.38 1.81 16 14 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 15 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 16 Si 0.92 23.61 26.00 -169.99 -4.42 19.19 16 17 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.89 6.64 56.52 0.38 -6.51 16 19 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 20 H 0.08 1.42 6.59 -51.93 -0.34 1.08 16 21 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 22 H 0.02 0.32 8.11 -51.93 -0.42 -0.10 16 23 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.18 6.70 -51.93 -0.35 0.83 16 30 H 0.08 1.60 6.89 -51.93 -0.36 1.24 16 31 H 0.36 7.65 7.23 45.56 0.33 7.98 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 246.16 15.07 3.71 3.71 Total: -1.00 -30.16 246.16 -6.23 -36.40 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.34 Total: 3.07 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.49 Total: -11.47 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.32 Total: -37.07 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.37 Total: -13.82 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.42 Total: 19.19 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.16 -6.23 -36.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535778097.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.956 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds