Wall clock time and date at job start Mon Mar 30 2020 02:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46849 * 110.99660 * 2 1 4 4 C 1.53040 * 109.52201 * 174.16058 * 3 2 1 5 5 C 1.53120 * 109.27972 * 59.17678 * 4 3 2 6 6 C 1.53118 * 109.16260 * 302.34581 * 5 4 3 7 7 C 1.46847 * 111.00350 * 235.78885 * 2 1 3 8 8 H 1.08996 * 109.45143 * 65.82754 * 7 2 1 9 9 C 1.53004 * 109.46002 * 305.85621 * 7 2 1 10 10 H 1.08996 * 109.47335 * 57.20351 * 9 7 2 11 11 O 1.42900 * 109.46813 * 297.20080 * 9 7 2 12 12 C 1.50699 * 109.46742 * 177.20391 * 9 7 2 13 13 H 1.08001 * 120.00400 * 356.65374 * 12 9 7 14 14 C 1.37880 * 119.99705 * 176.65093 * 12 9 7 15 15 N 1.31513 * 120.00162 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 120.00052 * 0.02562 * 14 12 9 17 17 H 1.48496 * 109.47148 * 269.99810 * 16 14 12 18 18 H 1.48501 * 109.46947 * 29.99895 * 16 14 12 19 19 H 1.48506 * 109.46931 * 149.99709 * 16 14 12 20 20 H 1.09005 * 109.46680 * 191.16714 * 1 2 3 21 21 H 1.09000 * 109.47399 * 311.16132 * 1 2 3 22 22 H 1.08998 * 109.47118 * 71.17224 * 1 2 3 23 23 H 1.08996 * 109.46332 * 54.14524 * 3 2 1 24 24 H 1.09003 * 109.46333 * 294.17407 * 3 2 1 25 25 H 1.08996 * 109.50559 * 299.23730 * 4 3 2 26 26 H 1.09001 * 109.53429 * 179.13503 * 4 3 2 27 27 H 1.08999 * 109.52493 * 182.43714 * 5 4 3 28 28 H 1.09003 * 109.57088 * 62.28031 * 5 4 3 29 29 H 1.08999 * 109.50285 * 297.71875 * 6 5 4 30 30 H 1.08999 * 109.54031 * 177.60995 * 6 5 4 31 31 H 0.96696 * 114.00320 * 300.00286 * 11 9 7 32 32 H 0.97002 * 120.00555 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8714 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7326 -0.2707 -2.0658 9 6 1.3892 -2.1755 -1.1203 10 1 0.3021 -2.1025 -1.1516 11 8 1.7868 -2.8545 0.0726 12 6 1.8759 -2.9441 -2.3218 13 1 2.5066 -2.4604 -3.0530 14 6 1.5160 -4.2647 -2.4874 15 7 1.9403 -4.9353 -3.5362 16 14 0.4246 -5.1011 -1.2230 17 1 1.2704 -5.7218 -0.1722 18 1 -0.4758 -4.0955 -0.6038 19 1 -0.3887 -6.1507 -1.8880 20 1 -0.3633 -1.0083 0.1990 21 1 -0.3634 0.6764 0.7737 22 1 -0.3633 0.3316 -0.9727 23 1 1.5633 1.9257 0.8329 24 1 1.7324 1.8609 -0.9376 25 1 3.7814 0.8569 1.0906 26 1 3.9103 2.3511 0.1314 27 1 5.1998 0.4716 -0.8905 28 1 3.8896 1.0351 -1.9564 29 1 3.7814 -1.3835 -0.0952 30 1 3.9099 -1.4309 -1.8703 31 1 2.7438 -2.9557 0.1671 32 1 1.6874 -5.8645 -3.6526 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535778097.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:25 Heat of formation + Delta-G solvation = -78.417397 kcal Electronic energy + Delta-G solvation = -13748.942430 eV Core-core repulsion = 11515.048028 eV Total energy + Delta-G solvation = -2233.894402 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.43586 -37.26911 -34.45833 -34.37307 -32.13059 -29.03610 -27.50285 -25.16359 -23.64990 -21.90078 -20.36499 -19.39300 -17.07107 -16.84885 -16.13135 -16.01266 -15.69469 -15.20830 -14.85186 -14.61592 -13.96571 -13.72576 -13.45808 -13.12748 -12.87504 -12.61613 -12.55041 -12.17865 -12.01736 -11.54328 -11.51468 -11.28997 -10.87879 -10.74006 -10.23809 -9.14779 -8.35502 -6.48791 1.40773 1.43535 1.59692 2.38832 2.98347 3.06714 3.91309 3.99144 4.04855 4.09082 4.27899 4.46156 4.53160 4.56546 4.65397 4.76729 4.86238 4.95225 5.01746 5.12367 5.13187 5.29507 5.35700 5.43950 5.48387 5.55976 6.07749 6.21885 6.33850 6.62870 7.16494 7.32845 8.78230 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047625 B = 0.012354 C = 0.010860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.780102 B = 2265.843475 C = 2577.726008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.051 3.949 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.102 4.102 7 C 0.079 3.921 8 H 0.018 0.982 9 C 0.206 3.794 10 H 0.048 0.952 11 O -0.576 6.576 12 C -0.556 4.556 13 H 0.044 0.956 14 C 0.030 3.970 15 N -0.937 5.937 16 Si 0.977 3.023 17 H -0.275 1.275 18 H -0.267 1.267 19 H -0.307 1.307 20 H 0.053 0.947 21 H 0.087 0.913 22 H 0.018 0.982 23 H 0.089 0.911 24 H 0.023 0.977 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.369 0.631 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 11.751 8.271 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.076 4.076 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.140 4.140 7 C -0.030 4.030 8 H 0.036 0.964 9 C 0.148 3.852 10 H 0.066 0.934 11 O -0.384 6.384 12 C -0.594 4.594 13 H 0.062 0.938 14 C -0.170 4.170 15 N -0.576 5.576 16 Si 0.806 3.194 17 H -0.201 1.201 18 H -0.192 1.192 19 H -0.236 1.236 20 H 0.072 0.928 21 H 0.105 0.895 22 H 0.036 0.964 23 H 0.107 0.893 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.217 0.783 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.523 11.379 8.709 14.339 hybrid contribution -0.206 -0.430 -1.040 1.144 sum 0.317 10.948 7.670 13.371 Atomic orbital electron populations 1.22361 0.87663 1.02108 1.00093 1.61912 1.07672 1.13733 1.43199 1.22228 0.96550 0.88481 1.00357 1.21561 0.93706 1.00747 0.98615 1.21592 1.00454 0.94790 0.98687 1.21449 0.93194 0.97783 1.01606 1.21988 0.96345 0.94542 0.90119 0.96422 1.19733 0.94805 0.88263 0.82381 0.93431 1.86273 1.28015 1.79665 1.44401 1.21814 1.32382 0.96941 1.08252 0.93826 1.25766 0.96338 0.98196 0.96669 1.70065 1.46707 1.10703 1.30128 0.85234 0.78891 0.77086 0.78201 1.20079 1.19158 1.23590 0.92818 0.89460 0.96367 0.89262 0.95844 0.91254 0.89391 0.90506 0.93034 0.91377 0.93087 0.78272 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 8.88 127.69 1.13 1.96 16 2 N -0.54 -18.33 4.66 -897.15 -4.18 -22.51 16 3 C 0.05 1.37 5.46 86.33 0.47 1.84 16 4 C -0.11 -2.58 6.09 30.65 0.19 -2.39 16 5 C -0.12 -3.27 6.00 30.67 0.18 -3.08 16 6 C -0.10 -3.68 4.79 30.65 0.15 -3.53 16 7 C 0.08 3.14 1.66 44.94 0.07 3.21 16 8 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 9 C 0.21 9.75 1.67 29.85 0.05 9.80 16 10 H 0.05 2.37 5.61 -2.39 -0.01 2.36 16 11 O -0.58 -26.33 10.55 -148.98 -1.57 -27.90 16 12 C -0.56 -31.25 8.59 25.60 0.22 -31.03 16 13 H 0.04 2.67 7.27 -2.91 -0.02 2.65 16 14 C 0.03 1.76 5.47 84.66 0.46 2.22 16 15 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 16 Si 0.98 48.80 26.00 68.60 1.78 50.58 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 18 H -0.27 -13.11 6.64 99.48 0.66 -12.45 16 19 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 20 H 0.05 1.94 6.59 -2.38 -0.02 1.93 16 21 H 0.09 2.22 7.96 -2.39 -0.02 2.20 16 22 H 0.02 0.57 8.11 -2.39 -0.02 0.55 16 23 H 0.09 1.98 8.00 -2.39 -0.02 1.96 16 24 H 0.02 0.63 8.14 -2.39 -0.02 0.62 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 2.38 6.70 -2.39 -0.02 2.36 16 30 H 0.05 2.09 6.89 -2.39 -0.02 2.08 16 31 H 0.37 15.33 7.23 -74.06 -0.54 14.79 16 32 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -64.42 246.16 -0.23 -64.65 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.51 Total: 13.96 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 2.93 Total: -21.00 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -3.88 Total: -80.28 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.57 Total: -27.90 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.78 Total: 50.58 kcal Total: -64.42 -0.23 -64.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535778097.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.772 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds