Wall clock time and date at job start Mon Mar 30 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46849 * 110.99256 * 2 1 4 4 C 1.53034 * 109.51709 * 185.84954 * 3 2 1 5 5 C 1.53122 * 109.27820 * 300.81796 * 4 3 2 6 6 C 1.53117 * 109.16237 * 57.65083 * 5 4 3 7 7 C 1.46847 * 110.99973 * 124.20555 * 2 1 3 8 8 H 1.09005 * 109.46355 * 294.16172 * 7 2 1 9 9 C 1.53001 * 109.46324 * 54.14265 * 7 2 1 10 10 H 1.08996 * 109.47273 * 295.78960 * 9 7 2 11 11 O 1.42897 * 109.46882 * 175.78903 * 9 7 2 12 12 C 1.50701 * 109.46946 * 55.79213 * 9 7 2 13 13 H 1.08003 * 120.00018 * 5.13738 * 12 9 7 14 14 C 1.37870 * 119.99914 * 185.13471 * 12 9 7 15 15 N 1.31510 * 120.00114 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00014 * 179.97438 * 14 12 9 17 17 H 1.48508 * 109.47132 * 270.00059 * 16 14 12 18 18 H 1.48503 * 109.47121 * 30.00025 * 16 14 12 19 19 H 1.48502 * 109.47100 * 150.00110 * 16 14 12 20 20 H 1.09004 * 109.47053 * 289.91625 * 1 2 3 21 21 H 1.08997 * 109.47160 * 49.91446 * 1 2 3 22 22 H 1.09001 * 109.46811 * 169.91835 * 1 2 3 23 23 H 1.09005 * 109.46982 * 65.83386 * 3 2 1 24 24 H 1.09000 * 109.45755 * 305.85893 * 3 2 1 25 25 H 1.09000 * 109.50374 * 180.87743 * 4 3 2 26 26 H 1.08996 * 109.53329 * 60.77624 * 4 3 2 27 27 H 1.08997 * 109.52301 * 297.74904 * 5 4 3 28 28 H 1.08998 * 109.52573 * 177.55933 * 5 4 3 29 29 H 1.09004 * 109.50457 * 182.40409 * 6 5 4 30 30 H 1.09004 * 109.50176 * 62.28394 * 6 5 4 31 31 H 0.96695 * 114.00396 * 300.00174 * 11 9 7 32 32 H 0.97006 * 120.00049 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5179 1.3343 -0.1470 5 6 4.1188 0.5371 1.0140 6 6 3.5182 -0.8713 1.0207 7 6 1.9953 -0.7707 1.1338 8 1 1.7327 -0.2705 2.0661 9 6 1.3891 -2.1754 1.1206 10 1 0.3125 -2.1081 1.2769 11 8 1.9741 -2.9564 2.1645 12 6 1.6637 -2.8285 -0.2095 13 1 2.2853 -2.3293 -0.9381 14 6 1.1215 -4.0633 -0.4962 15 7 0.3643 -4.6710 0.3909 16 14 1.4614 -4.8726 -2.1451 17 1 0.4188 -4.4646 -3.1210 18 1 2.7956 -4.4475 -2.6396 19 1 1.4397 -6.3489 -1.9859 20 1 -0.3633 0.3501 0.9662 21 1 -0.3633 0.6617 -0.7862 22 1 -0.3633 -1.0118 -0.1799 23 1 1.7325 1.8610 0.9376 24 1 1.5631 1.9257 -0.8330 25 1 3.9097 2.3514 -0.1313 26 1 3.7815 0.8573 -1.0909 27 1 3.8889 1.0355 1.9557 28 1 5.1998 0.4715 0.8900 29 1 3.9101 -1.4301 1.8706 30 1 3.7812 -1.3835 0.0951 31 1 2.9327 -3.0586 2.0894 32 1 -0.0174 -5.5396 0.1890 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535778100.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:28 Heat of formation + Delta-G solvation = -77.920019 kcal Electronic energy + Delta-G solvation = -13778.955599 eV Core-core repulsion = 11545.082765 eV Total energy + Delta-G solvation = -2233.872834 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.30844 -37.11132 -34.48525 -34.06976 -31.93372 -28.43887 -27.44070 -25.30258 -23.59532 -21.94727 -20.52363 -18.77937 -17.05939 -16.64239 -16.23751 -15.82445 -15.29666 -15.10618 -14.91083 -14.21403 -13.87659 -13.67450 -13.14838 -13.05237 -12.79769 -12.58696 -12.45941 -12.10480 -12.00811 -11.71731 -11.50591 -11.14968 -10.70116 -10.52923 -10.07150 -8.99340 -8.03792 -6.21079 1.43271 1.43919 1.54540 2.46526 3.08583 3.30119 3.99909 4.04809 4.11465 4.27522 4.39115 4.47739 4.56381 4.67114 4.70046 4.78381 4.92482 4.97549 5.11803 5.15438 5.22453 5.32496 5.37327 5.59941 5.69880 5.85175 6.19739 6.36241 6.48180 6.91853 7.42589 7.59422 9.02512 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.012462 C = 0.012041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.215803 B = 2246.277759 C = 2324.758089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.532 5.532 3 C 0.051 3.949 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.106 4.106 7 C 0.076 3.924 8 H 0.009 0.991 9 C 0.228 3.772 10 H 0.019 0.981 11 O -0.589 6.589 12 C -0.527 4.527 13 H 0.065 0.935 14 C 0.016 3.984 15 N -0.915 5.915 16 Si 0.953 3.047 17 H -0.278 1.278 18 H -0.265 1.265 19 H -0.290 1.290 20 H 0.014 0.986 21 H 0.080 0.920 22 H 0.049 0.951 23 H 0.025 0.975 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.357 0.643 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.710 11.180 -1.390 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C -0.077 4.077 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.143 4.143 7 C -0.033 4.033 8 H 0.027 0.973 9 C 0.171 3.829 10 H 0.037 0.963 11 O -0.394 6.394 12 C -0.565 4.565 13 H 0.083 0.917 14 C -0.183 4.183 15 N -0.555 5.555 16 Si 0.780 3.220 17 H -0.204 1.204 18 H -0.189 1.189 19 H -0.216 1.216 20 H 0.032 0.968 21 H 0.099 0.901 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.203 0.797 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.145 10.775 -1.577 12.044 hybrid contribution -0.136 -0.447 -0.072 0.473 sum 5.009 10.328 -1.649 11.596 Atomic orbital electron populations 1.22238 0.87907 1.01851 0.99361 1.61740 1.07431 1.13173 1.43408 1.22234 0.96617 0.88620 1.00185 1.21566 0.93727 1.00778 0.98792 1.21575 1.00371 0.94697 0.98591 1.21519 0.93086 0.97900 1.01833 1.22140 0.96529 0.95162 0.89459 0.97296 1.19374 0.91612 0.85779 0.86151 0.96282 1.86520 1.24697 1.75917 1.52282 1.21769 1.30904 1.02428 1.01377 0.91678 1.25878 0.94617 0.98289 0.99562 1.70212 1.33837 1.15480 1.35946 0.85648 0.78874 0.77074 0.80453 1.20406 1.18897 1.21607 0.96774 0.90129 0.93175 0.95639 0.89861 0.89281 0.92043 0.92325 0.90340 0.91919 0.92018 0.79658 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.31 8.85 127.69 1.13 2.44 16 2 N -0.53 -20.39 4.13 -897.14 -3.70 -24.10 16 3 C 0.05 1.50 5.46 86.32 0.47 1.97 16 4 C -0.11 -2.85 6.09 30.65 0.19 -2.67 16 5 C -0.11 -3.12 6.00 30.67 0.18 -2.94 16 6 C -0.11 -3.77 4.75 30.65 0.15 -3.62 16 7 C 0.08 3.16 1.86 44.94 0.08 3.25 16 8 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 9 C 0.23 11.83 2.12 29.85 0.06 11.90 16 10 H 0.02 1.14 6.72 -2.39 -0.02 1.13 16 11 O -0.59 -31.30 12.93 -148.98 -1.93 -33.22 16 12 C -0.53 -28.71 7.19 25.60 0.18 -28.53 16 13 H 0.07 3.52 6.71 -2.91 -0.02 3.50 16 14 C 0.02 0.92 5.42 84.65 0.46 1.38 16 15 N -0.91 -55.92 13.05 21.44 0.28 -55.64 16 16 Si 0.95 44.67 29.54 68.60 2.03 46.69 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H 0.01 0.50 8.12 -2.39 -0.02 0.49 16 21 H 0.08 2.53 7.99 -2.39 -0.02 2.51 16 22 H 0.05 2.27 6.35 -2.39 -0.02 2.26 16 23 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.08 2.15 8.01 -2.39 -0.02 2.13 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 2.15 6.77 -2.38 -0.02 2.13 16 30 H 0.06 2.44 6.78 -2.38 -0.02 2.42 16 31 H 0.36 16.51 7.22 -74.06 -0.53 15.97 16 32 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -64.78 250.54 0.14 -64.64 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.56 Total: 18.44 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 2.91 Total: -16.81 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -3.42 Total: -79.74 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -1.93 Total: -33.22 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.78 0.14 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535778100.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.281 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds