Wall clock time and date at job start Mon Mar 30 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.62839 * 2 1 4 4 O 1.43757 * 109.62981 * 120.38981 * 2 1 3 5 5 C 1.44786 * 104.81170 * 95.56802 * 4 2 1 6 6 C 1.54913 * 101.72273 * 36.10221 * 5 4 2 7 7 H 1.09003 * 110.69472 * 83.00849 * 6 5 4 8 8 C 1.52996 * 110.69244 * 206.04165 * 6 5 4 9 9 C 1.52998 * 109.46929 * 185.00073 * 8 6 5 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 O 1.43365 * 109.63261 * 239.75336 * 2 1 3 19 19 H 1.09002 * 109.46606 * 301.06239 * 1 2 3 20 20 H 1.08996 * 109.46963 * 61.06255 * 1 2 3 21 21 H 1.08997 * 109.46915 * 181.06641 * 1 2 3 22 22 H 1.09000 * 109.47287 * 178.93980 * 3 2 1 23 23 H 1.08998 * 109.46965 * 298.93930 * 3 2 1 24 24 H 1.09003 * 109.47243 * 58.93679 * 3 2 1 25 25 H 1.08995 * 110.97791 * 277.99100 * 5 4 2 26 26 H 1.09000 * 110.97414 * 154.21079 * 5 4 2 27 27 H 1.09000 * 109.47441 * 65.00163 * 8 6 5 28 28 H 1.09002 * 109.47087 * 304.99609 * 8 6 5 29 29 H 1.09001 * 109.47671 * 60.00109 * 9 8 6 30 30 H 1.09006 * 109.47297 * 299.99829 * 9 8 6 31 31 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0130 -0.6850 1.1680 5 6 2.2653 -2.0400 0.7246 6 6 2.7885 -1.8078 -0.7149 7 1 3.8516 -1.5672 -0.7042 8 6 2.5223 -3.0335 -1.5911 9 6 3.1585 -2.8247 -2.9668 10 6 2.8968 -4.0322 -3.8298 11 1 2.3335 -4.8654 -3.4362 12 6 3.3766 -4.0732 -5.1217 13 7 4.0630 -3.0589 -5.6008 14 14 3.0528 -5.5703 -6.1910 15 1 3.6692 -5.3671 -7.5268 16 1 3.6432 -6.7731 -5.5507 17 1 1.5882 -5.7605 -6.3461 18 8 2.0117 -0.6802 -1.1665 19 1 -0.3632 0.5303 0.8803 20 1 -0.3633 0.4972 -0.8993 21 1 -0.3633 -1.0275 0.0191 22 1 3.1338 1.4382 0.0190 23 1 1.6977 1.9503 -0.8993 24 1 1.6666 1.9615 0.8803 25 1 1.3458 -2.6253 0.7159 26 1 3.0245 -2.5180 1.3435 27 1 1.4472 -3.1720 -1.7053 28 1 2.9546 -3.9169 -1.1212 29 1 4.2336 -2.6863 -2.8528 30 1 2.7262 -1.9412 -3.4368 31 1 4.2314 -2.2817 -5.0454 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008700002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:26 Heat of formation + Delta-G solvation = -115.904200 kcal Electronic energy + Delta-G solvation = -13233.365184 eV Core-core repulsion = 10900.126570 eV Total energy + Delta-G solvation = -2333.238614 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.35599 -35.15794 -34.16929 -32.85664 -30.79455 -27.81306 -27.30845 -24.53230 -22.12507 -21.01335 -20.49399 -17.25629 -16.63596 -16.11340 -15.10317 -14.35077 -13.97453 -13.67313 -13.40391 -12.91364 -12.82678 -12.32291 -12.13908 -12.03307 -11.94970 -11.74584 -11.58567 -10.79613 -10.74200 -10.12808 -9.99031 -9.94823 -9.64101 -9.37436 -8.48758 -8.28424 -6.32193 -4.01078 3.45382 3.47878 3.60514 3.66550 4.15863 4.56968 4.82109 4.93051 4.99781 5.18199 5.39257 5.45473 5.49769 5.59407 5.72431 5.74514 5.80866 5.87452 6.08026 6.16273 6.24333 6.40636 6.57746 6.91704 7.38155 7.46478 7.61942 8.24484 8.50284 8.92373 9.71634 11.08623 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.062846 B = 0.007318 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.428749 B = 3825.463670 C = 3942.114572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.245 3.755 3 C -0.152 4.152 4 O -0.381 6.381 5 C 0.019 3.981 6 C 0.053 3.947 7 H 0.079 0.921 8 C -0.102 4.102 9 C 0.011 3.989 10 C -0.604 4.604 11 H 0.048 0.952 12 C 0.014 3.986 13 N -0.913 5.913 14 Si 1.069 2.931 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.288 1.288 18 O -0.366 6.366 19 H 0.069 0.931 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.005 0.995 30 H 0.015 0.985 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 4.664 11.983 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.168 3.832 3 C -0.209 4.209 4 O -0.302 6.302 5 C -0.057 4.057 6 C -0.004 4.004 7 H 0.097 0.903 8 C -0.139 4.139 9 C -0.026 4.026 10 C -0.642 4.642 11 H 0.066 0.934 12 C -0.190 4.190 13 N -0.549 5.549 14 Si 0.897 3.103 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.215 1.215 18 O -0.288 6.288 19 H 0.088 0.912 20 H 0.092 0.908 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.033 0.967 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.568 4.184 10.473 12.168 hybrid contribution -0.296 0.503 1.604 1.707 sum -4.864 4.687 12.078 13.838 Atomic orbital electron populations 1.22348 0.94318 1.03173 1.02798 1.23351 0.92794 0.91494 0.75567 1.22051 1.02398 0.93767 1.02734 1.89169 1.86134 1.22340 1.32563 1.24479 1.01287 0.84446 0.95515 1.24006 0.95810 0.87935 0.92617 0.90264 1.21669 1.01624 0.93023 0.97621 1.19181 0.94863 0.97645 0.90892 1.22059 1.38558 1.03462 1.00135 0.93407 1.25853 0.93991 1.02515 0.96644 1.70767 1.37411 1.06851 1.39899 0.83549 0.76142 0.74475 0.76101 1.20757 1.21478 1.21484 1.88999 1.69535 1.41970 1.28248 0.91174 0.90769 0.91897 0.91582 0.90545 0.91213 0.90818 0.87768 0.92151 0.91547 0.97650 0.96686 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.20 37.16 0.34 -1.91 16 2 C 0.24 3.83 1.47 -26.73 -0.04 3.79 16 3 C -0.15 -2.01 9.24 37.16 0.34 -1.66 16 4 O -0.38 -6.00 11.01 -59.04 -0.65 -6.65 16 5 C 0.02 0.28 7.36 38.17 0.28 0.56 16 6 C 0.05 0.97 3.64 -25.72 -0.09 0.88 16 7 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 8 C -0.10 -2.14 4.91 -26.73 -0.13 -2.27 16 9 C 0.01 0.30 4.24 -27.88 -0.12 0.18 16 10 C -0.60 -17.68 9.11 -34.44 -0.31 -17.99 16 11 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 12 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 13 N -0.91 -28.78 13.65 55.43 0.76 -28.02 16 14 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 18 O -0.37 -7.06 10.44 -59.04 -0.62 -7.68 16 19 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 20 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 26 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 30 H 0.01 0.43 7.94 -51.93 -0.41 0.01 16 31 H 0.27 8.50 7.22 -40.82 -0.29 8.21 16 LS Contribution 261.32 15.07 3.94 3.94 Total: -1.00 -32.39 261.32 -6.45 -38.84 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.97 Total: -2.97 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 0.17 Total: -18.12 kcal Atomic # 7 Polarization: -28.78 SS G_CDS: 0.76 Total: -28.02 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.27 Total: -14.33 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.39 -6.45 -38.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008700002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.065 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds