Wall clock time and date at job start Mon Mar 30 2020 02:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99809 * 2 1 4 4 H 1.48501 * 109.47289 * 269.99497 * 3 2 1 5 5 H 1.48505 * 109.47225 * 29.99743 * 3 2 1 6 6 H 1.48500 * 109.47077 * 149.99589 * 3 2 1 7 7 C 1.37879 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99691 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.64672 * 299.73084 * 9 7 2 11 11 C 1.53257 * 109.55825 * 179.45904 * 9 7 2 12 12 C 1.53258 * 108.84693 * 185.63904 * 11 9 7 13 13 H 1.09002 * 109.55916 * 294.68865 * 12 11 9 14 14 C 1.53004 * 109.64901 * 174.41631 * 12 11 9 15 15 C 1.50693 * 109.47104 * 175.27069 * 14 12 11 16 16 O 1.20760 * 120.00307 * 125.00052 * 15 14 12 17 17 O 1.43097 * 108.94236 * 54.52785 * 12 11 9 18 18 C 1.42965 * 113.76440 * 302.02881 * 17 12 11 19 19 O 1.42965 * 109.47197 * 58.79806 * 18 17 12 20 20 H 0.97000 * 120.00217 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.57483 * 65.82834 * 11 9 7 22 22 H 1.09002 * 109.57779 * 305.44936 * 11 9 7 23 23 H 1.08999 * 109.47034 * 295.26953 * 14 12 11 24 24 H 1.08998 * 109.46872 * 55.26860 * 14 12 11 25 25 H 1.08007 * 120.00355 * 304.99712 * 15 14 12 26 26 H 1.09004 * 109.47188 * 178.79692 * 18 17 12 27 27 H 1.09000 * 109.47307 * 298.79488 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6267 -2.5618 0.8917 11 6 2.2452 -3.6655 -0.0125 12 6 1.4668 -4.9779 -0.1548 13 1 0.8504 -5.1345 0.7305 14 6 2.4464 -6.1430 -0.3095 15 6 1.6826 -7.4418 -0.3326 16 8 1.8228 -8.2085 -1.2550 17 8 0.6302 -4.8985 -1.3131 18 6 -0.2922 -3.8066 -1.2838 19 8 0.4283 -2.5772 -1.1675 20 1 -0.4850 0.8400 -0.0004 21 1 2.8094 -3.6748 0.9201 22 1 2.9289 -3.5533 -0.8539 23 1 3.0003 -6.0306 -1.2416 24 1 3.1429 -6.1458 0.5289 25 1 1.0098 -7.6871 0.4760 26 1 -0.8764 -3.7997 -2.2040 27 1 -0.9605 -3.9182 -0.4299 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034441161.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:07 Heat of formation + Delta-G solvation = -136.974464 kcal Electronic energy + Delta-G solvation = -13046.622436 eV Core-core repulsion = 10576.637053 eV Total energy + Delta-G solvation = -2469.985384 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = -0.03 seconds Orbital eigenvalues (eV) -39.34197 -38.44908 -34.91543 -33.20552 -32.12137 -29.44773 -25.94247 -24.59870 -22.71226 -20.87896 -20.05610 -16.91828 -16.71438 -15.59311 -15.26143 -15.16426 -14.79192 -14.43221 -14.36443 -13.53889 -13.02979 -12.47249 -12.12837 -11.81650 -11.13293 -10.96188 -10.76161 -10.59433 -10.34733 -10.10666 -9.64121 -9.56944 -8.76852 -8.67371 -8.25281 -6.11917 -4.25239 2.10526 3.26470 3.33099 3.35169 4.15880 4.34007 4.42707 4.94641 5.05189 5.26568 5.53015 5.55635 5.62449 5.79556 5.83609 6.12343 6.20695 6.36326 6.55557 6.63872 7.31141 7.47363 7.61391 7.78936 8.09189 8.59433 8.93140 9.46117 10.96148 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.074514 B = 0.008504 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.680271 B = 3291.743258 C = 3543.251607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.214 3.786 10 H 0.018 0.982 11 C -0.169 4.169 12 C 0.094 3.906 13 H 0.059 0.941 14 C -0.183 4.183 15 C 0.355 3.645 16 O -0.469 6.469 17 O -0.411 6.411 18 C 0.216 3.784 19 O -0.369 6.369 20 H 0.263 0.737 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -8.133 2.779 8.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.566 4.566 8 H 0.085 0.915 9 C 0.159 3.841 10 H 0.036 0.964 11 C -0.207 4.207 12 C 0.036 3.964 13 H 0.077 0.923 14 C -0.220 4.220 15 C 0.211 3.789 16 O -0.341 6.341 17 O -0.333 6.333 18 C 0.101 3.899 19 O -0.289 6.289 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.112 0.888 24 H 0.128 0.872 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.589 -8.408 1.997 8.787 hybrid contribution 0.295 1.009 0.430 1.136 sum 1.884 -7.399 2.427 8.012 Atomic orbital electron populations 1.70020 1.06159 1.26842 1.46776 1.25090 0.94834 0.99510 0.93437 0.86539 0.79861 0.82882 0.78370 1.20351 1.21043 1.19647 1.20965 0.92777 0.89434 1.53430 0.91536 1.19835 0.87126 0.92478 0.84633 0.96402 1.22867 1.00447 0.95027 1.02404 1.21975 0.91479 0.94530 0.88438 0.92344 1.22549 0.99452 0.94381 1.05651 1.25950 0.80432 0.85564 0.86926 1.90370 1.58318 1.49948 1.35415 1.87999 1.52153 1.51028 1.42136 1.23737 0.88167 0.77817 1.00163 1.88540 1.60614 1.32684 1.47069 0.92765 0.91176 0.91138 0.88828 0.87223 0.89323 0.87518 0.95478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.01 12.84 55.43 0.71 -24.29 15 2 C 0.08 2.16 5.40 -17.82 -0.10 2.06 15 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.53 -14.54 8.80 -34.44 -0.30 -14.85 15 8 H 0.07 1.76 7.75 -52.49 -0.41 1.36 15 9 C 0.21 5.39 2.60 -27.75 -0.07 5.32 15 10 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 11 C -0.17 -3.38 4.88 -26.47 -0.13 -3.51 15 12 C 0.09 1.58 2.73 -26.60 -0.07 1.51 15 13 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 14 C -0.18 -2.46 5.52 -27.88 -0.15 -2.61 15 15 C 0.35 4.63 10.96 36.00 0.39 5.03 15 16 O -0.47 -7.96 17.90 6.00 0.11 -7.85 15 17 O -0.41 -8.13 10.31 -59.03 -0.61 -8.74 15 18 C 0.22 4.49 7.82 101.05 0.79 5.28 15 19 O -0.37 -9.63 9.94 -59.03 -0.59 -10.21 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 22 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 23 H 0.09 1.40 8.12 -51.93 -0.42 0.98 15 24 H 0.11 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.09 0.85 8.06 -52.48 -0.42 0.42 15 26 H 0.11 1.99 8.14 -51.93 -0.42 1.57 15 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 LS Contribution 239.79 15.07 3.61 3.61 Total: -1.00 -32.18 239.79 -4.77 -36.95 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -3.35 Total: -3.61 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 0.36 Total: -1.77 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.71 Total: -24.29 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.09 Total: -26.80 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.18 -4.77 -36.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034441161.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.023 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.03 seconds