Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99809 * 2 1 4 4 H 1.48501 * 109.47289 * 269.99497 * 3 2 1 5 5 H 1.48505 * 109.47225 * 29.99743 * 3 2 1 6 6 H 1.48500 * 109.47077 * 149.99589 * 3 2 1 7 7 C 1.37879 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99691 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.64672 * 299.73084 * 9 7 2 11 11 C 1.53257 * 109.55825 * 179.45904 * 9 7 2 12 12 C 1.53258 * 108.84693 * 185.63904 * 11 9 7 13 13 H 1.09002 * 109.55916 * 294.68865 * 12 11 9 14 14 C 1.53004 * 109.64901 * 174.41631 * 12 11 9 15 15 C 1.50693 * 109.47104 * 175.27069 * 14 12 11 16 16 O 1.20760 * 120.00307 * 125.00052 * 15 14 12 17 17 O 1.43097 * 108.94236 * 54.52785 * 12 11 9 18 18 C 1.42965 * 113.76440 * 302.02881 * 17 12 11 19 19 O 1.42965 * 109.47197 * 58.79806 * 18 17 12 20 20 H 0.97000 * 120.00217 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.57483 * 65.82834 * 11 9 7 22 22 H 1.09002 * 109.57779 * 305.44936 * 11 9 7 23 23 H 1.08999 * 109.47034 * 295.26953 * 14 12 11 24 24 H 1.08998 * 109.46872 * 55.26860 * 14 12 11 25 25 H 1.08007 * 120.00355 * 304.99712 * 15 14 12 26 26 H 1.09004 * 109.47188 * 178.79692 * 18 17 12 27 27 H 1.09000 * 109.47307 * 298.79488 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6267 -2.5618 0.8917 11 6 2.2452 -3.6655 -0.0125 12 6 1.4668 -4.9779 -0.1548 13 1 0.8504 -5.1345 0.7305 14 6 2.4464 -6.1430 -0.3095 15 6 1.6826 -7.4418 -0.3326 16 8 1.8228 -8.2085 -1.2550 17 8 0.6302 -4.8985 -1.3131 18 6 -0.2922 -3.8066 -1.2838 19 8 0.4283 -2.5772 -1.1675 20 1 -0.4850 0.8400 -0.0004 21 1 2.8094 -3.6748 0.9201 22 1 2.9289 -3.5533 -0.8539 23 1 3.0003 -6.0306 -1.2416 24 1 3.1429 -6.1458 0.5289 25 1 1.0098 -7.6871 0.4760 26 1 -0.8764 -3.7997 -2.2040 27 1 -0.9605 -3.9182 -0.4299 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034441161.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = -159.927249 kcal Electronic energy + Delta-G solvation = -13047.617744 eV Core-core repulsion = 10576.637053 eV Total energy + Delta-G solvation = -2470.980691 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78248 -39.77917 -36.65730 -34.93664 -33.89768 -31.01630 -27.74792 -26.24311 -24.35281 -22.01592 -21.71991 -18.86890 -18.11720 -17.18507 -16.82416 -16.55539 -16.49349 -16.04981 -15.73570 -15.05408 -14.62826 -14.29551 -13.64240 -13.02235 -12.87488 -12.79562 -12.59892 -12.17360 -12.14090 -11.76654 -11.36691 -10.86942 -10.75359 -10.34310 -10.10245 -8.19605 -6.40347 1.08431 1.41812 1.43785 1.53840 2.39218 2.74397 2.99952 3.41299 3.67914 3.86700 4.03041 4.19071 4.23796 4.43794 4.56267 4.65589 4.76710 4.84382 4.91988 5.15109 5.45339 5.71485 6.07214 6.11393 6.48479 6.59043 7.01174 7.35918 8.88803 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.074514 B = 0.008504 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.680271 B = 3291.743258 C = 3543.251607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.553 4.553 8 H 0.068 0.932 9 C 0.206 3.794 10 H -0.004 1.004 11 C -0.160 4.160 12 C 0.091 3.909 13 H 0.084 0.916 14 C -0.176 4.176 15 C 0.364 3.636 16 O -0.513 6.513 17 O -0.419 6.419 18 C 0.214 3.786 19 O -0.408 6.408 20 H 0.264 0.736 21 H 0.093 0.907 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.149 0.851 25 H 0.138 0.862 26 H 0.123 0.877 27 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -8.753 3.658 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.590 4.590 8 H 0.087 0.913 9 C 0.151 3.849 10 H 0.014 0.986 11 C -0.198 4.198 12 C 0.034 3.966 13 H 0.101 0.899 14 C -0.214 4.214 15 C 0.224 3.776 16 O -0.387 6.387 17 O -0.341 6.341 18 C 0.100 3.900 19 O -0.329 6.329 20 H 0.073 0.927 21 H 0.111 0.889 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.166 0.834 25 H 0.154 0.846 26 H 0.140 0.860 27 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.291 -9.041 2.892 9.765 hybrid contribution 0.061 1.166 0.178 1.181 sum 2.353 -7.875 3.069 8.774 Atomic orbital electron populations 1.70140 1.07710 1.27695 1.48074 1.25964 0.95683 1.03194 0.93015 0.85479 0.78978 0.78426 0.78259 1.20439 1.20429 1.18298 1.21434 0.93256 0.91069 1.53266 0.91339 1.19801 0.87705 0.93834 0.83590 0.98617 1.22716 0.99332 0.94785 1.02964 1.22174 0.91759 0.94183 0.88507 0.89865 1.22560 0.99082 0.93346 1.06370 1.26462 0.79757 0.84409 0.87009 1.90379 1.59600 1.51296 1.37403 1.87992 1.52315 1.50058 1.43783 1.23907 0.88117 0.76506 1.01505 1.88429 1.61668 1.35579 1.47193 0.92747 0.88877 0.92630 0.90762 0.83383 0.84569 0.85960 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.93 12.84 21.45 0.28 -52.66 15 2 C 0.02 1.35 5.40 84.66 0.46 1.80 15 3 Si 0.96 43.02 29.54 68.60 2.03 45.04 15 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 6 H -0.26 -10.89 7.11 99.48 0.71 -10.19 15 7 C -0.55 -30.60 8.80 25.60 0.23 -30.38 15 8 H 0.07 3.63 7.75 -2.91 -0.02 3.61 15 9 C 0.21 10.40 2.60 29.93 0.08 10.48 15 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 11 C -0.16 -6.18 4.88 30.77 0.15 -6.03 15 12 C 0.09 2.86 2.73 30.68 0.08 2.94 15 13 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 14 C -0.18 -4.20 5.52 29.85 0.16 -4.04 15 15 C 0.36 8.31 10.96 71.23 0.78 9.09 15 16 O -0.51 -16.46 17.90 -1.45 -0.03 -16.48 15 17 O -0.42 -15.96 10.31 -126.22 -1.30 -17.26 15 18 C 0.21 8.77 7.82 113.37 0.89 9.65 15 19 O -0.41 -21.49 9.94 -126.22 -1.25 -22.75 15 20 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 21 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 22 H 0.05 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.07 2.09 8.12 -2.39 -0.02 2.07 15 24 H 0.15 2.40 8.14 -2.39 -0.02 2.38 15 25 H 0.14 1.90 8.06 -2.91 -0.02 1.88 15 26 H 0.12 4.50 8.14 -2.38 -0.02 4.48 15 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 Total: -1.00 -70.43 239.79 3.70 -66.73 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.15 Total: 3.85 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 2.83 Total: -6.47 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.28 Total: -52.66 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -2.58 Total: -56.50 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -70.43 3.70 -66.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034441161.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.195 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds