Wall clock time and date at job start Mon Mar 30 2020 01:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.38384 * 120.00090 * 179.97438 * 11 10 9 13 13 N 1.31758 * 127.92173 * 359.68416 * 12 11 10 14 14 N 1.26405 * 117.48427 * 179.76445 * 13 12 11 15 15 N 1.28569 * 119.31158 * 0.57107 * 14 13 12 16 16 S 1.70149 * 105.25629 * 359.69654 * 15 14 13 17 17 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 19 19 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 20 20 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 21 21 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 22 22 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0022 12 6 6.1784 -3.8350 -0.0018 13 7 5.6832 -5.0560 0.0054 14 7 6.5030 -6.0181 -0.0004 15 7 7.7646 -5.7700 -0.0015 16 16 7.8871 -4.0730 -0.0029 17 1 -0.4850 0.8401 0.0004 18 1 3.8752 -0.6804 0.8888 19 1 3.8745 -0.6801 -0.8911 20 1 3.6584 -3.1503 0.8892 21 1 3.6578 -3.1506 -0.8907 22 1 5.9715 -1.7966 -0.0025 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034476302.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:58 Heat of formation + Delta-G solvation = 59.068151 kcal Electronic energy + Delta-G solvation = -10154.145807 eV Core-core repulsion = 8064.166748 eV Total energy + Delta-G solvation = -2089.979059 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.043 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.31038 -38.31148 -35.25553 -33.55523 -31.93671 -28.15153 -26.46376 -23.22444 -22.15990 -20.74768 -19.24959 -18.54440 -17.39296 -16.32957 -16.24462 -15.85418 -14.95855 -14.66596 -13.76679 -13.62079 -13.41196 -12.72848 -12.28459 -12.13874 -11.98121 -11.74037 -11.52218 -11.33649 -11.29633 -10.77833 -9.49738 -8.29200 -6.37003 -0.90751 -0.60338 0.28033 1.10776 1.41091 1.43141 1.53402 1.81665 2.37110 3.06481 3.20997 3.75306 4.17534 4.35532 4.69312 4.96469 5.35616 5.38860 5.58798 6.01377 6.23505 6.72245 7.27715 7.43218 8.87104 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.083453 B = 0.006996 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.437132 B = 4001.542986 C = 4316.532780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.233 1.233 7 C -0.537 4.537 8 H 0.034 0.966 9 C -0.017 4.017 10 C 0.144 3.856 11 N -0.626 5.626 12 C 0.304 3.696 13 N -0.397 5.397 14 N 0.000 5.000 15 N -0.286 5.286 16 S 0.243 5.757 17 H 0.267 0.733 18 H 0.042 0.958 19 H 0.041 0.959 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.465 -0.549 0.022 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.156 1.156 7 C -0.576 4.576 8 H 0.053 0.947 9 C -0.055 4.055 10 C 0.019 3.981 11 N -0.264 5.264 12 C -0.075 4.075 13 N -0.266 5.266 14 N 0.004 4.996 15 N -0.276 5.276 16 S 0.362 5.638 17 H 0.076 0.924 18 H 0.060 0.940 19 H 0.059 0.941 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 16.868 -1.480 0.029 16.933 hybrid contribution -0.929 1.337 -0.026 1.628 sum 15.939 -0.143 0.003 15.940 Atomic orbital electron populations 1.70069 1.08623 1.28398 1.51843 1.26052 0.95624 1.03817 0.93811 0.85598 0.79823 0.77572 0.79237 1.19168 1.21725 1.15561 1.21188 0.91338 0.93489 1.51553 0.94749 1.19699 0.94580 0.92457 0.98720 1.21548 0.74946 0.99563 1.02008 1.44410 1.07654 1.02379 1.71983 1.27319 0.95594 0.91517 0.93051 1.72325 1.29065 0.94879 1.30309 1.75277 0.94576 1.23029 1.06745 1.82721 1.12190 1.03258 1.29471 1.85281 1.02458 1.08488 1.67556 0.92388 0.93952 0.94089 0.91720 0.91729 0.71830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.81 13.96 21.45 0.30 -56.51 14 2 C 0.00 0.24 5.47 84.65 0.46 0.70 14 3 Si 0.96 39.52 27.47 68.60 1.88 41.40 14 4 H -0.27 -10.61 7.11 99.48 0.71 -9.91 14 5 H -0.29 -12.26 7.11 99.48 0.71 -11.56 14 6 H -0.23 -8.30 6.54 99.48 0.65 -7.65 14 7 C -0.54 -28.15 9.66 25.60 0.25 -27.90 14 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 14 9 C -0.02 -0.63 4.16 29.85 0.12 -0.51 14 10 C 0.14 4.79 6.02 86.38 0.52 5.31 14 11 N -0.63 -15.54 5.70 -348.36 -1.99 -17.53 14 12 C 0.30 8.13 8.53 178.80 1.53 9.66 14 13 N -0.40 -13.15 11.44 -57.79 -0.66 -13.81 14 14 N 0.00 0.00 12.76 37.02 0.47 0.47 14 15 N -0.29 -8.28 13.44 37.02 0.50 -7.78 14 16 S 0.24 5.23 23.98 -56.49 -1.35 3.88 14 17 H 0.27 14.93 8.31 -92.71 -0.77 14.16 14 18 H 0.04 1.51 7.20 -2.39 -0.02 1.50 14 19 H 0.04 1.44 7.57 -2.39 -0.02 1.43 14 20 H 0.06 2.32 8.14 -2.39 -0.02 2.30 14 21 H 0.06 2.31 8.14 -2.39 -0.02 2.29 14 22 H 0.44 7.81 8.60 -92.71 -0.80 7.01 14 Total: -1.00 -63.45 219.29 2.43 -61.02 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 0.40 Total: 1.59 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 2.88 Total: -12.74 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -1.38 Total: -95.15 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.88 Total: 41.40 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.35 Total: 3.88 kcal Total: -63.45 2.43 -61.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034476302.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.091 kcal (2) G-P(sol) polarization free energy of solvation -63.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds