Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99954 * 2 1 4 4 H 1.48503 * 109.47174 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47052 * 299.99648 * 3 2 1 6 6 H 1.48496 * 109.47263 * 60.00002 * 3 2 1 7 7 C 1.38953 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99923 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00224 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99949 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00274 * 179.97438 * 10 9 7 13 13 H 1.08998 * 110.59144 * 43.01180 * 12 10 9 14 14 C 1.54933 * 110.66944 * 280.00609 * 12 10 9 15 15 C 1.54594 * 102.91997 * 203.98409 * 14 12 10 16 16 H 1.09005 * 110.30718 * 263.04287 * 15 14 12 17 17 O 1.42896 * 110.39435 * 140.91737 * 15 14 12 18 18 C 1.53991 * 105.14285 * 21.95481 * 15 14 12 19 19 N 1.47905 * 107.22505 * 1.12969 * 18 15 14 20 20 H 0.97004 * 120.00145 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99909 * 359.97438 * 9 7 2 22 22 H 1.08999 * 110.72416 * 85.62272 * 14 12 10 23 23 H 1.08999 * 110.72531 * 322.33814 * 14 12 10 24 24 H 0.96694 * 114.00159 * 182.77774 * 17 15 14 25 25 H 1.09002 * 109.91707 * 120.58029 * 18 15 14 26 26 H 1.09002 * 109.91668 * 241.67819 * 18 15 14 27 27 H 1.00892 * 110.99818 * 95.27851 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8630 0.0011 13 1 0.4056 -4.8221 -0.6946 14 6 0.7527 -5.2103 1.4289 15 6 0.5945 -6.7472 1.3757 16 1 -0.4435 -7.0140 1.1766 17 8 1.0303 -7.3355 2.6029 18 6 1.4960 -7.2044 0.2140 19 7 2.1473 -5.9961 -0.3367 20 1 -0.4850 0.8401 -0.0004 21 1 0.3534 -2.3906 0.0005 22 1 -0.2042 -4.7309 1.6350 23 1 1.4965 -4.9247 2.1728 24 1 0.9935 -8.3017 2.6108 25 1 2.2517 -7.8987 0.5815 26 1 0.8934 -7.6853 -0.5566 27 1 3.0616 -5.8617 0.0683 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040860017.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = -116.738911 kcal Electronic energy + Delta-G solvation = -12859.887826 eV Core-core repulsion = 10423.072673 eV Total energy + Delta-G solvation = -2436.815153 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89306 -39.08444 -36.41792 -35.88051 -33.36527 -30.67924 -29.49476 -26.96541 -23.79635 -21.84262 -21.02788 -20.01390 -18.50822 -17.86732 -16.99682 -16.72315 -16.04001 -15.59943 -15.37584 -14.78244 -14.43291 -13.93127 -13.56184 -13.34347 -12.97240 -12.78151 -12.56406 -12.43339 -12.12495 -11.90182 -11.57368 -11.15321 -10.39924 -10.07948 -9.59701 -8.51127 -6.00678 1.34280 1.41092 1.55479 1.91372 2.26917 2.92055 3.03860 3.26311 3.57469 3.65203 3.81095 4.08951 4.27833 4.40525 4.48432 4.67230 4.86744 4.92923 5.04672 5.37332 5.63976 5.95841 6.23158 6.52245 6.90904 7.05981 7.47365 8.01397 8.66278 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.068456 B = 0.007972 C = 0.007631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.925122 B = 3511.563334 C = 3668.548824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.079 0.921 9 N -0.561 5.561 10 C 0.440 3.560 11 O -0.631 6.631 12 C 0.072 3.928 13 H 0.120 0.880 14 C -0.138 4.138 15 C 0.084 3.916 16 H 0.097 0.903 17 O -0.583 6.583 18 C 0.012 3.988 19 N -0.664 5.664 20 H 0.280 0.720 21 H 0.398 0.602 22 H 0.095 0.905 23 H 0.051 0.949 24 H 0.398 0.602 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.635 -11.560 1.843 12.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.097 0.903 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.519 6.519 12 C -0.041 4.041 13 H 0.137 0.863 14 C -0.178 4.178 15 C 0.024 3.976 16 H 0.115 0.885 17 O -0.392 6.392 18 C -0.118 4.118 19 N -0.294 5.294 20 H 0.089 0.911 21 H 0.232 0.768 22 H 0.114 0.886 23 H 0.070 0.930 24 H 0.249 0.751 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.086 -10.874 1.284 11.376 hybrid contribution 0.042 0.525 0.802 0.960 sum -3.043 -10.349 2.086 10.987 Atomic orbital electron populations 1.69670 1.06859 1.29493 1.49633 1.26072 0.96567 1.02461 0.95839 0.84845 0.77991 0.76856 0.78470 1.19843 1.19370 1.19425 1.19737 0.92771 0.83955 1.50384 0.90308 1.41874 1.09381 1.04578 1.63840 1.20579 0.88000 0.86086 0.82634 1.90471 1.15889 1.87793 1.57712 1.22498 0.95917 0.88898 0.96790 0.86257 1.23004 1.02667 0.96207 0.95873 1.23095 0.98807 0.91453 0.84264 0.88480 1.86527 1.89432 1.26872 1.36322 1.23705 0.98540 0.93065 0.96490 1.62864 1.05460 1.01566 1.59489 0.91065 0.76787 0.88621 0.92976 0.75081 0.89447 0.87839 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.39 13.05 21.66 0.28 -49.11 15 2 C -0.01 -0.48 5.50 84.93 0.47 -0.01 15 3 Si 1.00 43.06 29.55 68.60 2.03 45.09 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.34 -19.56 9.68 84.04 0.81 -18.74 15 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 15 9 N -0.56 -29.45 5.29 -306.99 -1.62 -31.07 15 10 C 0.44 21.79 7.11 87.66 0.62 22.41 15 11 O -0.63 -36.20 15.44 -3.07 -0.05 -36.25 15 12 C 0.07 2.64 3.69 44.46 0.16 2.81 15 13 H 0.12 3.90 8.14 -2.39 -0.02 3.88 15 14 C -0.14 -4.41 6.23 31.80 0.20 -4.21 15 15 C 0.08 1.96 4.35 31.47 0.14 2.09 15 16 H 0.10 1.72 8.14 -2.38 -0.02 1.70 15 17 O -0.58 -13.46 13.26 -148.98 -1.98 -15.44 15 18 C 0.01 0.27 7.31 86.44 0.63 0.90 15 19 N -0.66 -22.48 7.27 -483.49 -3.52 -26.00 15 20 H 0.28 14.00 8.31 -92.71 -0.77 13.23 15 21 H 0.40 19.70 7.90 -92.70 -0.73 18.97 15 22 H 0.10 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.05 1.99 7.99 -2.39 -0.02 1.97 15 24 H 0.40 4.76 9.11 -74.06 -0.67 4.09 15 25 H 0.09 1.76 7.96 -2.39 -0.02 1.74 15 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 27 H 0.34 13.01 7.79 -89.70 -0.70 12.31 15 Total: -1.00 -69.49 237.84 -2.71 -72.19 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.89 Total: 35.35 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 3.04 Total: 5.24 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.86 Total: -106.18 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.02 Total: -51.69 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.49 -2.71 -72.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860017.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.545 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds