Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48504 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47181 * 300.00092 * 3 2 1 6 6 H 1.48496 * 109.47272 * 60.00214 * 3 2 1 7 7 C 1.38953 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99738 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99740 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00362 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99775 * 179.97438 * 10 9 7 13 13 H 1.09004 * 110.46136 * 42.40992 * 12 10 9 14 14 C 1.54381 * 110.41376 * 279.99816 * 12 10 9 15 15 C 1.54257 * 105.14978 * 217.42278 * 14 12 10 16 16 H 1.08995 * 110.32672 * 118.84838 * 15 14 12 17 17 O 1.42910 * 110.32027 * 241.04997 * 15 14 12 18 18 C 1.54377 * 105.06382 * 359.94367 * 15 14 12 19 19 N 1.48567 * 104.59159 * 23.85582 * 18 15 14 20 20 H 0.97000 * 119.99427 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99917 * 0.02562 * 9 7 2 22 22 H 1.09002 * 110.32526 * 98.47097 * 14 12 10 23 23 H 1.08998 * 110.32190 * 336.36738 * 14 12 10 24 24 H 0.96696 * 113.99929 * 179.97438 * 17 15 14 25 25 H 1.08999 * 110.41555 * 142.63458 * 18 15 14 26 26 H 1.09004 * 110.41760 * 264.96131 * 18 15 14 27 27 H 1.00902 * 110.99892 * 200.96033 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 0.0000 13 1 0.3999 -4.8160 -0.6884 14 6 0.7575 -5.2033 1.4252 15 6 0.9099 -6.7334 1.5485 16 1 1.6062 -6.9812 2.3496 17 8 -0.3611 -7.3411 1.7885 18 6 1.4746 -7.1913 0.1866 19 7 2.1475 -5.9866 -0.3638 20 1 -0.4849 0.8401 0.0004 21 1 0.3534 -2.3907 -0.0005 22 1 -0.2868 -4.9158 1.5477 23 1 1.3775 -4.7001 2.1670 24 1 -0.3268 -8.3036 1.8745 25 1 2.1938 -7.9985 0.3252 26 1 0.6669 -7.5118 -0.4715 27 1 2.2526 -6.0567 -1.3649 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040860019.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = -82.921966 kcal Electronic energy + Delta-G solvation = -12841.992180 eV Core-core repulsion = 10406.643440 eV Total energy + Delta-G solvation = -2435.348740 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21387 -37.44139 -35.15291 -33.80695 -31.23097 -29.51837 -28.29117 -24.94814 -22.13916 -20.75610 -18.97836 -17.86983 -17.66423 -16.24965 -15.76920 -14.65642 -14.30914 -13.81779 -13.68784 -13.11878 -12.96077 -12.74482 -12.18612 -11.50071 -11.43229 -11.32441 -11.04485 -10.63810 -10.32043 -10.19913 -9.95911 -9.48490 -8.61028 -8.03391 -7.93241 -6.39057 -3.79810 3.17986 3.28670 3.36174 3.80593 4.10363 4.22350 4.54435 4.75058 4.91889 5.14784 5.26920 5.34723 5.53773 5.67251 5.79299 5.94988 6.09243 6.30034 6.37844 6.90049 7.48677 7.57916 7.63218 8.09562 8.65291 9.21190 9.57986 10.10355 10.78812 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.067003 B = 0.008084 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.791451 B = 3462.712413 C = 3716.226055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.451 3.549 11 O -0.573 6.573 12 C 0.058 3.942 13 H 0.060 0.940 14 C -0.105 4.105 15 C 0.099 3.901 16 H 0.069 0.931 17 O -0.565 6.565 18 C 0.004 3.996 19 N -0.633 5.633 20 H 0.271 0.729 21 H 0.392 0.608 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.374 0.626 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -11.294 1.155 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.235 3.765 11 O -0.456 6.456 12 C -0.055 4.055 13 H 0.078 0.922 14 C -0.143 4.143 15 C 0.040 3.960 16 H 0.087 0.913 17 O -0.370 6.370 18 C -0.126 4.126 19 N -0.263 5.263 20 H 0.081 0.919 21 H 0.225 0.775 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.221 0.779 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.010 -10.400 1.655 10.579 hybrid contribution -0.832 0.127 -0.675 1.079 sum -1.842 -10.272 0.980 10.482 Atomic orbital electron populations 1.69627 1.05945 1.28025 1.50713 1.25262 0.95624 0.99697 0.97371 0.85802 0.79724 0.81145 0.77683 1.19203 1.20787 1.20753 1.19766 0.93402 0.82203 1.47447 0.87855 1.41895 1.09185 1.04522 1.64458 1.19523 0.88208 0.84102 0.84638 1.90526 1.13571 1.86852 1.54684 1.22369 0.93773 0.92648 0.96736 0.92233 1.22231 1.02611 0.93055 0.96441 1.22572 0.84200 0.93805 0.95473 0.91302 1.86583 1.30744 1.24739 1.94914 1.23650 0.97621 0.94720 0.96597 1.63364 1.44137 1.00520 1.18258 0.91936 0.77496 0.89639 0.89591 0.77898 0.90031 0.93503 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 13.05 55.50 0.72 -24.15 15 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 15 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 15 8 H 0.10 3.08 7.16 -52.49 -0.38 2.70 15 9 N -0.56 -14.65 5.29 -10.96 -0.06 -14.71 15 10 C 0.45 11.06 6.97 -10.99 -0.08 10.98 15 11 O -0.57 -16.25 16.14 5.55 0.09 -16.16 15 12 C 0.06 1.10 3.59 -67.13 -0.24 0.86 15 13 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 14 C -0.10 -1.79 6.34 -25.35 -0.16 -1.95 15 15 C 0.10 1.36 4.42 -25.35 -0.11 1.25 15 16 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 17 O -0.57 -7.03 13.26 -35.23 -0.47 -7.50 15 18 C 0.00 0.06 7.21 -2.18 -0.02 0.04 15 19 N -0.63 -10.83 6.87 -103.83 -0.71 -11.54 15 20 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 21 H 0.39 9.79 7.90 -40.82 -0.32 9.47 15 22 H 0.09 1.42 7.98 -51.93 -0.41 1.00 15 23 H 0.09 1.58 7.85 -51.93 -0.41 1.18 15 24 H 0.37 2.76 9.12 45.56 0.42 3.17 15 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.05 0.56 8.08 -51.93 -0.42 0.14 15 27 H 0.34 5.34 8.92 -39.29 -0.35 4.99 15 LS Contribution 238.94 15.07 3.60 3.60 Total: -1.00 -32.83 238.94 -4.97 -37.80 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -2.28 Total: 13.34 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.85 Total: 3.07 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.05 Total: -50.40 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.38 Total: -23.66 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.83 -4.97 -37.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860019.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.119 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds