Wall clock time and date at job start Mon Mar 30 2020 02:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48504 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47181 * 300.00092 * 3 2 1 6 6 H 1.48496 * 109.47272 * 60.00214 * 3 2 1 7 7 C 1.38953 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99738 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99740 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00362 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99775 * 179.97438 * 10 9 7 13 13 H 1.09004 * 110.46136 * 42.40992 * 12 10 9 14 14 C 1.54381 * 110.41376 * 279.99816 * 12 10 9 15 15 C 1.54257 * 105.14978 * 217.42278 * 14 12 10 16 16 H 1.08995 * 110.32672 * 118.84838 * 15 14 12 17 17 O 1.42910 * 110.32027 * 241.04997 * 15 14 12 18 18 C 1.54377 * 105.06382 * 359.94367 * 15 14 12 19 19 N 1.48567 * 104.59159 * 23.85582 * 18 15 14 20 20 H 0.97000 * 119.99427 * 359.97438 * 1 2 3 21 21 H 0.96996 * 119.99917 * 0.02562 * 9 7 2 22 22 H 1.09002 * 110.32526 * 98.47097 * 14 12 10 23 23 H 1.08998 * 110.32190 * 336.36738 * 14 12 10 24 24 H 0.96696 * 113.99929 * 179.97438 * 17 15 14 25 25 H 1.08999 * 110.41555 * 142.63458 * 18 15 14 26 26 H 1.09004 * 110.41760 * 264.96131 * 18 15 14 27 27 H 1.00902 * 110.99892 * 200.96033 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 0.0000 13 1 0.3999 -4.8160 -0.6884 14 6 0.7575 -5.2033 1.4252 15 6 0.9099 -6.7334 1.5485 16 1 1.6062 -6.9812 2.3496 17 8 -0.3611 -7.3411 1.7885 18 6 1.4746 -7.1913 0.1866 19 7 2.1475 -5.9866 -0.3638 20 1 -0.4849 0.8401 0.0004 21 1 0.3534 -2.3907 -0.0005 22 1 -0.2868 -4.9158 1.5477 23 1 1.3775 -4.7001 2.1670 24 1 -0.3268 -8.3036 1.8745 25 1 2.1938 -7.9985 0.3252 26 1 0.6669 -7.5118 -0.4715 27 1 2.2526 -6.0567 -1.3649 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040860019.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:17 Heat of formation + Delta-G solvation = -112.431230 kcal Electronic energy + Delta-G solvation = -12843.271798 eV Core-core repulsion = 10406.643440 eV Total energy + Delta-G solvation = -2436.628358 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74987 -39.02559 -36.39692 -35.83660 -33.30014 -30.88025 -29.60617 -26.91379 -23.67283 -21.93397 -20.79373 -19.89187 -18.77073 -17.86440 -17.29613 -16.51763 -15.85887 -15.44056 -15.30577 -14.64499 -14.29964 -14.06680 -13.71355 -13.39720 -13.04068 -12.84239 -12.63331 -12.41577 -12.10973 -11.76190 -11.52333 -10.96832 -10.39443 -10.03043 -9.53380 -8.47889 -5.97367 1.36044 1.41526 1.56284 1.98666 2.28168 2.84217 3.13158 3.24441 3.60635 3.69621 3.78652 4.03883 4.19249 4.41399 4.52383 4.70907 4.82242 4.91854 5.01624 5.39575 5.59795 5.99918 6.27614 6.58443 6.91432 7.11025 7.53813 8.09601 8.69856 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.067003 B = 0.008084 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.791451 B = 3462.712413 C = 3716.226055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.571 5.571 10 C 0.447 3.553 11 O -0.617 6.617 12 C 0.067 3.933 13 H 0.076 0.924 14 C -0.108 4.108 15 C 0.109 3.891 16 H 0.080 0.920 17 O -0.574 6.574 18 C 0.012 3.988 19 N -0.654 5.654 20 H 0.278 0.722 21 H 0.395 0.605 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.399 0.601 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 -12.132 1.210 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.208 5.208 10 C 0.234 3.766 11 O -0.503 6.503 12 C -0.046 4.046 13 H 0.094 0.906 14 C -0.146 4.146 15 C 0.049 3.951 16 H 0.098 0.902 17 O -0.382 6.382 18 C -0.118 4.118 19 N -0.285 5.285 20 H 0.088 0.912 21 H 0.229 0.771 22 H 0.106 0.894 23 H 0.082 0.918 24 H 0.250 0.750 25 H 0.125 0.875 26 H 0.083 0.917 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.668 -11.280 1.710 11.530 hybrid contribution -0.663 0.321 -0.683 1.005 sum -2.331 -10.958 1.027 11.250 Atomic orbital electron populations 1.69687 1.06915 1.29326 1.50217 1.26073 0.96544 1.02467 0.96105 0.84843 0.78016 0.76896 0.78395 1.19746 1.19482 1.19501 1.19733 0.92726 0.83964 1.50061 0.90282 1.41957 1.09234 1.04686 1.64892 1.20546 0.88047 0.85560 0.82440 1.90484 1.15726 1.87816 1.56251 1.22187 0.93601 0.90295 0.98563 0.90645 1.22190 1.02085 0.95968 0.94407 1.22366 0.84984 0.91356 0.96381 0.90248 1.86525 1.29767 1.27072 1.94873 1.23738 0.98553 0.93443 0.96026 1.63309 1.44728 1.01456 1.19039 0.91221 0.77141 0.89376 0.91807 0.75031 0.87544 0.91695 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 13.05 21.66 0.28 -50.26 15 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 15 3 Si 1.00 43.51 29.55 68.60 2.03 45.53 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 15 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 7 C -0.34 -19.54 9.68 84.04 0.81 -18.72 15 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 15 9 N -0.57 -30.43 5.29 -306.98 -1.62 -32.06 15 10 C 0.45 22.44 6.97 87.66 0.61 23.05 15 11 O -0.62 -36.03 16.14 -3.06 -0.05 -36.08 15 12 C 0.07 2.50 3.59 44.28 0.16 2.66 15 13 H 0.08 2.57 8.14 -2.38 -0.02 2.55 15 14 C -0.11 -3.59 6.34 31.49 0.20 -3.39 15 15 C 0.11 2.71 4.42 31.49 0.14 2.85 15 16 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 17 O -0.57 -12.38 13.26 -148.98 -1.98 -14.36 15 18 C 0.01 0.27 7.21 86.45 0.62 0.89 15 19 N -0.65 -21.45 6.87 -482.40 -3.31 -24.76 15 20 H 0.28 14.21 8.31 -92.71 -0.77 13.44 15 21 H 0.39 20.14 7.90 -92.71 -0.73 19.41 15 22 H 0.09 2.84 7.98 -2.39 -0.02 2.82 15 23 H 0.06 2.38 7.85 -2.39 -0.02 2.36 15 24 H 0.40 4.29 9.12 -74.06 -0.68 3.62 15 25 H 0.11 1.97 8.14 -2.39 -0.02 1.95 15 26 H 0.06 1.30 8.08 -2.39 -0.02 1.28 15 27 H 0.35 10.41 8.92 -89.69 -0.80 9.61 15 Total: -1.00 -70.91 238.94 -2.63 -73.55 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.99 Total: 31.30 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 3.01 Total: 7.14 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.65 Total: -107.08 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -2.03 Total: -50.43 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.91 -2.63 -73.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040860019.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.886 kcal (2) G-P(sol) polarization free energy of solvation -70.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds