Wall clock time and date at job start Mon Mar 30 2020 02:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00350 * 2 1 4 4 H 1.48503 * 109.47114 * 270.00206 * 3 2 1 5 5 H 1.48499 * 109.47061 * 30.00167 * 3 2 1 6 6 H 1.48499 * 109.47282 * 150.00368 * 3 2 1 7 7 C 1.37881 * 119.99374 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99621 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00282 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47151 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00089 * 270.00005 * 10 9 7 12 12 N 1.34779 * 120.00472 * 5.26223 * 11 10 9 13 13 S 1.71209 * 119.99839 * 185.26321 * 11 10 9 14 14 C 1.46503 * 119.99595 * 89.99963 * 10 9 7 15 15 C 1.53001 * 117.49961 * 3.13354 * 14 10 9 16 16 C 1.53002 * 117.49936 * 294.50954 * 14 10 9 17 17 H 0.96998 * 119.99597 * 359.97438 * 1 2 3 18 18 H 1.08995 * 109.47337 * 59.99878 * 9 7 2 19 19 H 1.08999 * 109.47007 * 299.99553 * 9 7 2 20 20 H 0.97006 * 119.99286 * 0.02562 * 12 11 10 21 21 H 0.96998 * 120.00252 * 180.02562 * 12 11 10 22 22 H 1.08999 * 115.54749 * 148.84833 * 14 10 9 23 23 H 1.08993 * 117.49715 * 0.02562 * 15 14 10 24 24 H 1.09006 * 117.49256 * 145.02111 * 15 14 10 25 25 H 1.08996 * 117.50229 * 214.98399 * 16 14 10 26 26 H 1.09003 * 117.49980 * 359.97438 * 16 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.6407 -4.1250 -1.1666 12 7 2.2870 -3.5465 -2.3314 13 16 3.6463 -5.5106 -1.1696 14 6 2.6788 -4.1695 1.2693 15 6 2.0893 -3.5941 2.5587 16 6 3.5301 -3.2649 2.1626 17 1 -0.4849 0.8401 0.0004 18 1 0.6246 -2.5571 -0.8896 19 1 0.6240 -2.5567 0.8903 20 1 1.7176 -2.7612 -2.3296 21 1 2.6019 -3.9154 -3.1714 22 1 2.9184 -5.2327 1.2557 23 1 1.3471 -2.8016 2.4628 24 1 1.9408 -4.2790 3.3936 25 1 4.3294 -3.7331 2.7370 26 1 3.7364 -2.2557 1.8061 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549675.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:49 Heat of formation + Delta-G solvation = 18.772647 kcal Electronic energy + Delta-G solvation = -11117.940866 eV Core-core repulsion = 9129.754806 eV Total energy + Delta-G solvation = -1988.186060 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.56162 -37.36764 -35.18085 -33.54217 -30.03680 -25.92118 -24.23092 -23.24144 -21.61748 -19.58302 -18.76251 -18.46279 -16.94029 -16.60867 -15.85325 -15.46255 -15.07482 -14.14068 -13.72032 -13.57532 -12.99578 -12.78066 -12.45405 -12.15530 -12.12751 -11.87868 -11.57562 -11.34533 -10.72155 -9.77757 -8.89835 -8.75130 -8.32323 -6.49496 0.54178 0.95481 1.36992 1.42179 1.49613 1.85220 2.32491 2.80057 2.97116 3.01682 3.86099 4.10708 4.16465 4.45461 4.73498 4.89035 5.03770 5.10266 5.33657 5.36160 5.57784 5.75588 5.81647 6.10584 6.53253 6.62701 7.23162 8.71690 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.036650 B = 0.012326 C = 0.010720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.794551 B = 2271.044589 C = 2611.380496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.033 3.967 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.231 3.769 10 N -0.517 5.517 11 C 0.596 3.404 12 N -0.784 5.784 13 S -0.771 6.771 14 C 0.057 3.943 15 C -0.162 4.162 16 C -0.173 4.173 17 H 0.271 0.729 18 H 0.035 0.965 19 H 0.048 0.952 20 H 0.412 0.588 21 H 0.432 0.568 22 H 0.144 0.856 23 H 0.091 0.909 24 H 0.132 0.868 25 H 0.120 0.880 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -1.067 1.423 2.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.169 4.169 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.108 3.892 10 N -0.220 5.220 11 C 0.227 3.773 12 N -0.330 5.330 13 S -0.647 6.647 14 C -0.048 4.048 15 C -0.199 4.199 16 C -0.212 4.212 17 H 0.080 0.920 18 H 0.053 0.947 19 H 0.066 0.934 20 H 0.247 0.753 21 H 0.268 0.732 22 H 0.161 0.839 23 H 0.110 0.890 24 H 0.150 0.850 25 H 0.138 0.862 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.285 -1.691 1.570 2.642 hybrid contribution -0.403 1.919 -0.510 2.026 sum 0.882 0.227 1.060 1.397 Atomic orbital electron populations 1.69977 1.07063 1.28620 1.49300 1.25539 0.95467 1.02026 0.93913 0.85577 0.78562 0.79280 0.78445 1.19923 1.20700 1.19865 1.21423 0.93125 0.90576 1.53327 0.92719 1.19595 0.87769 0.82712 0.99099 1.46853 1.40372 1.31401 1.03406 1.21490 0.84225 0.88512 0.83025 1.42858 1.52031 1.32056 1.06076 1.93179 1.51910 1.23791 1.95772 1.22071 1.05344 0.98161 0.79224 1.23410 0.96842 1.03401 0.96249 1.23338 0.94979 1.00537 1.02333 0.91952 0.94708 0.93417 0.75293 0.73225 0.83872 0.89041 0.85019 0.86153 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.67 13.29 21.45 0.28 -45.38 15 2 C 0.03 1.56 5.46 84.66 0.46 2.02 15 3 Si 0.96 38.83 29.54 68.60 2.03 40.86 15 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 15 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 7 C -0.55 -25.40 8.62 25.60 0.22 -25.18 15 8 H 0.05 2.66 7.21 -2.91 -0.02 2.64 15 9 C 0.23 9.85 4.37 85.63 0.37 10.22 15 10 N -0.52 -20.40 2.79 -690.11 -1.92 -22.32 15 11 C 0.60 23.48 7.84 179.06 1.40 24.88 15 12 N -0.78 -25.49 8.71 -59.11 -0.51 -26.00 15 13 S -0.77 -34.23 28.89 -56.49 -1.63 -35.86 15 14 C 0.06 2.02 5.90 44.99 0.27 2.29 15 15 C -0.16 -4.98 9.74 30.60 0.30 -4.68 15 16 C -0.17 -5.67 10.27 30.60 0.31 -5.36 15 17 H 0.27 12.99 8.31 -92.71 -0.77 12.22 15 18 H 0.04 1.52 6.59 -2.39 -0.02 1.50 15 19 H 0.05 2.15 5.98 -2.39 -0.01 2.14 15 20 H 0.41 13.31 6.65 -92.70 -0.62 12.70 15 21 H 0.43 11.84 8.81 -92.71 -0.82 11.02 15 22 H 0.14 5.22 6.95 -2.39 -0.02 5.20 15 23 H 0.09 3.25 6.10 -2.39 -0.01 3.23 15 24 H 0.13 3.13 8.14 -2.38 -0.02 3.11 15 25 H 0.12 3.27 8.14 -2.39 -0.02 3.25 15 26 H 0.08 3.16 6.92 -2.39 -0.02 3.14 15 Total: -1.00 -57.02 236.53 1.36 -55.66 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.22 Total: 28.85 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 3.34 Total: 4.20 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -2.15 Total: -93.70 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 16 Polarization: -34.23 SS G_CDS: -1.63 Total: -35.86 kcal Total: -57.02 1.36 -55.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549675.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.437 kcal (2) G-P(sol) polarization free energy of solvation -57.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds