Wall clock time and date at job start Mon Mar 30 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86806 * 120.00226 * 2 1 4 4 H 1.48501 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46773 * 300.00378 * 3 2 1 6 6 H 1.48496 * 109.46981 * 60.00319 * 3 2 1 7 7 C 1.38955 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00168 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.34766 * 119.99886 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00690 * 0.02562 * 10 9 7 12 12 C 1.50711 * 120.00008 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.53914 * 54.89041 * 12 10 9 14 14 C 1.53093 * 109.50641 * 294.78501 * 12 10 9 15 15 N 1.47015 * 109.26056 * 183.21567 * 14 12 10 16 16 C 1.47015 * 110.75017 * 58.61185 * 15 14 12 17 17 C 1.53094 * 109.26042 * 301.38578 * 16 15 14 18 18 O 1.43015 * 109.50739 * 175.00053 * 12 10 9 19 19 H 0.96997 * 119.99983 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99509 * 0.02562 * 9 7 2 21 21 H 1.09004 * 109.50414 * 303.14815 * 14 12 10 22 22 H 1.08999 * 109.51106 * 63.27428 * 14 12 10 23 23 H 1.00901 * 111.00431 * 182.39340 * 15 14 12 24 24 H 1.09003 * 109.50470 * 181.44930 * 16 15 14 25 25 H 1.09000 * 109.50644 * 61.32257 * 16 15 14 26 26 H 1.09004 * 109.50690 * 296.91866 * 17 16 15 27 27 H 1.08993 * 109.51048 * 176.78374 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 0.0000 13 1 0.5494 -4.8835 -0.8400 14 6 0.4647 -5.0029 1.3105 15 7 -0.2061 -6.3108 1.3386 16 6 0.7726 -7.4009 1.2150 17 6 1.5485 -7.2369 -0.0945 18 8 2.1679 -5.9480 -0.1175 19 1 -0.4850 0.8400 0.0004 20 1 0.3533 -2.3906 -0.0005 21 1 1.1528 -4.9286 2.1526 22 1 -0.2804 -4.2102 1.3775 23 1 -0.7600 -6.4153 2.1755 24 1 0.2522 -8.3587 1.2123 25 1 1.4656 -7.3649 2.0556 26 1 0.8631 -7.3264 -0.9373 27 1 2.3139 -8.0098 -0.1634 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043801152.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:14 Heat of formation + Delta-G solvation = -78.720180 kcal Electronic energy + Delta-G solvation = -13008.186234 eV Core-core repulsion = 10573.019696 eV Total energy + Delta-G solvation = -2435.166537 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.43554 -37.48014 -34.47499 -33.83781 -31.60357 -30.66092 -26.82579 -24.75595 -23.80026 -20.72446 -19.34940 -18.04622 -16.86132 -15.95027 -15.49953 -14.75364 -14.62758 -14.27206 -14.12473 -13.76121 -13.37800 -12.84077 -12.18366 -11.58838 -11.51064 -11.24073 -11.06179 -10.48766 -10.34701 -10.23897 -9.57776 -9.42781 -8.46278 -8.33570 -8.00361 -6.44243 -3.85413 3.15353 3.26578 3.33890 3.76617 3.84531 4.21057 4.26300 5.00805 5.03457 5.17249 5.24554 5.31943 5.46030 5.55585 5.79144 5.82875 6.00924 6.17277 6.21638 6.87117 7.28130 7.44719 7.53620 8.03109 8.58020 9.14867 9.48823 10.00453 10.73371 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.071518 B = 0.008491 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.418462 B = 3296.698733 C = 3563.497326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.105 0.895 9 N -0.556 5.556 10 C 0.447 3.553 11 O -0.575 6.575 12 C 0.087 3.913 13 H 0.077 0.923 14 C 0.032 3.968 15 N -0.687 5.687 16 C 0.018 3.982 17 C 0.059 3.941 18 O -0.355 6.355 19 H 0.272 0.728 20 H 0.393 0.607 21 H 0.045 0.955 22 H 0.093 0.907 23 H 0.345 0.655 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 -10.023 2.241 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.123 0.877 9 N -0.194 5.194 10 C 0.232 3.768 11 O -0.458 6.458 12 C 0.025 3.975 13 H 0.095 0.905 14 C -0.098 4.098 15 N -0.319 5.319 16 C -0.112 4.112 17 C -0.018 4.018 18 O -0.272 6.272 19 H 0.082 0.918 20 H 0.227 0.773 21 H 0.063 0.937 22 H 0.112 0.888 23 H 0.162 0.838 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.449 -9.822 1.547 10.240 hybrid contribution -0.213 0.738 0.962 1.231 sum -2.662 -9.084 2.510 9.793 Atomic orbital electron populations 1.69618 1.05951 1.28196 1.50293 1.25274 0.95655 0.99733 0.97131 0.85774 0.79748 0.80944 0.77736 1.19147 1.20673 1.20709 1.19779 0.93484 0.81962 1.47729 0.87727 1.41776 1.09228 1.04179 1.64195 1.19382 0.88189 0.84052 0.85213 1.90543 1.13630 1.86799 1.54801 1.21917 0.90617 0.87964 0.97020 0.90517 1.22560 0.97874 0.91728 0.97665 1.60578 1.24447 1.02007 1.44900 1.22633 0.94710 0.95182 0.98663 1.22668 0.96907 0.86247 0.96019 1.88144 1.32141 1.12834 1.94097 0.91810 0.77287 0.93674 0.88846 0.83767 0.89927 0.94245 0.92564 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.62 15 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 15 8 H 0.10 3.10 7.16 -52.49 -0.38 2.73 15 9 N -0.56 -14.38 5.25 -10.96 -0.06 -14.44 15 10 C 0.45 11.30 7.13 -10.98 -0.08 11.23 15 11 O -0.57 -16.92 16.09 -14.28 -0.23 -17.15 15 12 C 0.09 1.74 3.22 -27.83 -0.09 1.65 15 13 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 14 C 0.03 0.53 6.00 -3.71 -0.02 0.51 15 15 N -0.69 -9.41 6.92 -113.50 -0.79 -10.19 15 16 C 0.02 0.22 6.76 -3.71 -0.03 0.20 15 17 C 0.06 0.85 7.01 37.21 0.26 1.11 15 18 O -0.35 -7.15 10.01 -55.06 -0.55 -7.70 15 19 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 20 H 0.39 9.61 7.78 -40.82 -0.32 9.30 15 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.09 1.53 8.02 -51.93 -0.42 1.11 15 23 H 0.34 3.85 8.90 -39.29 -0.35 3.50 15 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 15 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 27 H 0.10 1.14 8.14 -51.93 -0.42 0.72 15 LS Contribution 236.52 15.07 3.56 3.56 Total: -1.00 -32.36 236.52 -5.69 -38.04 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -3.13 Total: 8.86 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.20 Total: 6.64 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.12 Total: -48.25 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.78 Total: -24.85 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.36 -5.69 -38.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043801152.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.677 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds