Wall clock time and date at job start Mon Mar 30 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86806 * 120.00226 * 2 1 4 4 H 1.48501 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46773 * 300.00378 * 3 2 1 6 6 H 1.48496 * 109.46981 * 60.00319 * 3 2 1 7 7 C 1.38955 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00168 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.34766 * 119.99886 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00690 * 0.02562 * 10 9 7 12 12 C 1.50711 * 120.00008 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.53914 * 54.89041 * 12 10 9 14 14 C 1.53093 * 109.50641 * 294.78501 * 12 10 9 15 15 N 1.47015 * 109.26056 * 183.21567 * 14 12 10 16 16 C 1.47015 * 110.75017 * 58.61185 * 15 14 12 17 17 C 1.53094 * 109.26042 * 301.38578 * 16 15 14 18 18 O 1.43015 * 109.50739 * 175.00053 * 12 10 9 19 19 H 0.96997 * 119.99983 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99509 * 0.02562 * 9 7 2 21 21 H 1.09004 * 109.50414 * 303.14815 * 14 12 10 22 22 H 1.08999 * 109.51106 * 63.27428 * 14 12 10 23 23 H 1.00901 * 111.00431 * 182.39340 * 15 14 12 24 24 H 1.09003 * 109.50470 * 181.44930 * 16 15 14 25 25 H 1.09000 * 109.50644 * 61.32257 * 16 15 14 26 26 H 1.09004 * 109.50690 * 296.91866 * 17 16 15 27 27 H 1.08993 * 109.51048 * 176.78374 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 0.0000 13 1 0.5494 -4.8835 -0.8400 14 6 0.4647 -5.0029 1.3105 15 7 -0.2061 -6.3108 1.3386 16 6 0.7726 -7.4009 1.2150 17 6 1.5485 -7.2369 -0.0945 18 8 2.1679 -5.9480 -0.1175 19 1 -0.4850 0.8400 0.0004 20 1 0.3533 -2.3906 -0.0005 21 1 1.1528 -4.9286 2.1526 22 1 -0.2804 -4.2102 1.3775 23 1 -0.7600 -6.4153 2.1755 24 1 0.2522 -8.3587 1.2123 25 1 1.4656 -7.3649 2.0556 26 1 0.8631 -7.3264 -0.9373 27 1 2.3139 -8.0098 -0.1634 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043801152.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:14 Heat of formation + Delta-G solvation = -105.167501 kcal Electronic energy + Delta-G solvation = -13009.333076 eV Core-core repulsion = 10573.019696 eV Total energy + Delta-G solvation = -2436.313379 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.00475 -39.26935 -36.14354 -35.55050 -33.52436 -32.19989 -28.31932 -26.56242 -25.22626 -22.11972 -21.09280 -20.09167 -18.41301 -17.52005 -17.01121 -16.58224 -16.06129 -15.69930 -15.66040 -15.37099 -14.96712 -14.57529 -13.81005 -13.53236 -12.97726 -12.76196 -12.50261 -12.40147 -12.11904 -11.74949 -11.58535 -10.79963 -10.36481 -10.09424 -9.60760 -8.51514 -6.01748 1.34699 1.42269 1.56642 1.88311 2.19134 2.52041 3.00675 3.16174 3.45462 3.78975 3.95443 4.06079 4.18467 4.29500 4.45672 4.56430 4.70388 4.86014 4.92062 5.37369 5.69985 5.86972 6.14640 6.32499 6.52988 7.05203 7.43423 7.98757 8.65809 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.071518 B = 0.008491 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.418462 B = 3296.698733 C = 3563.497326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.340 4.340 8 H 0.079 0.921 9 N -0.556 5.556 10 C 0.439 3.561 11 O -0.625 6.625 12 C 0.097 3.903 13 H 0.090 0.910 14 C 0.042 3.958 15 N -0.681 5.681 16 C 0.019 3.981 17 C 0.048 3.952 18 O -0.391 6.391 19 H 0.281 0.719 20 H 0.399 0.601 21 H 0.029 0.971 22 H 0.097 0.903 23 H 0.362 0.638 24 H 0.122 0.878 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 -10.503 2.499 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.207 4.207 3 Si 0.820 3.180 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.097 0.903 9 N -0.193 5.193 10 C 0.225 3.775 11 O -0.512 6.512 12 C 0.035 3.965 13 H 0.108 0.892 14 C -0.088 4.088 15 N -0.315 5.315 16 C -0.110 4.110 17 C -0.028 4.028 18 O -0.310 6.310 19 H 0.091 0.909 20 H 0.234 0.766 21 H 0.047 0.953 22 H 0.115 0.885 23 H 0.183 0.817 24 H 0.140 0.860 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.698 -10.325 1.817 11.117 hybrid contribution 0.131 0.816 0.864 1.196 sum -3.567 -9.509 2.682 10.504 Atomic orbital electron populations 1.69666 1.06833 1.29628 1.49261 1.26076 0.96583 1.02381 0.95650 0.84828 0.77960 0.76711 0.78551 1.19891 1.19336 1.19246 1.19738 0.92807 0.83688 1.50705 0.90295 1.41781 1.09386 1.04150 1.63972 1.20340 0.87949 0.85647 0.83539 1.90494 1.16019 1.87834 1.56877 1.21677 0.89990 0.85574 0.99224 0.89193 1.22325 0.97378 0.93979 0.95130 1.60543 1.24295 1.00599 1.46033 1.22721 0.94653 0.96290 0.97345 1.23069 0.98163 0.84048 0.97537 1.88091 1.33650 1.14755 1.94490 0.90934 0.76598 0.95286 0.88501 0.81733 0.86023 0.94676 0.91484 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.72 13.05 21.66 0.28 -48.44 15 2 C -0.01 -0.33 5.50 84.93 0.47 0.14 15 3 Si 1.00 42.69 29.55 68.60 2.03 44.72 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 7 C -0.34 -19.66 9.68 84.04 0.81 -18.84 15 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 15 9 N -0.56 -29.43 5.25 -306.98 -1.61 -31.04 15 10 C 0.44 22.82 7.13 87.66 0.63 23.44 15 11 O -0.63 -38.37 16.09 15.89 0.26 -38.12 15 12 C 0.10 3.89 3.22 29.88 0.10 3.98 15 13 H 0.09 3.33 8.14 -2.38 -0.02 3.31 15 14 C 0.04 1.40 6.00 86.31 0.52 1.91 15 15 N -0.68 -16.82 6.92 -512.99 -3.55 -20.38 15 16 C 0.02 0.42 6.76 86.31 0.58 1.00 15 17 C 0.05 1.27 7.01 72.01 0.50 1.78 15 18 O -0.39 -15.62 10.01 -130.02 -1.30 -16.92 15 19 H 0.28 13.88 8.31 -92.71 -0.77 13.11 15 20 H 0.40 19.77 7.78 -92.70 -0.72 19.05 15 21 H 0.03 1.04 8.14 -2.39 -0.02 1.02 15 22 H 0.10 3.09 8.02 -2.39 -0.02 3.07 15 23 H 0.36 6.98 8.90 -89.69 -0.80 6.18 15 24 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 15 26 H 0.07 1.62 8.14 -2.38 -0.02 1.60 15 27 H 0.12 2.54 8.14 -2.39 -0.02 2.52 15 Total: -1.00 -70.51 236.52 -0.62 -71.13 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.33 Total: 25.64 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 3.61 Total: 13.42 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -4.88 Total: -99.86 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -1.05 Total: -55.04 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -70.51 -0.62 -71.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043801152.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.040 kcal (2) G-P(sol) polarization free energy of solvation -70.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds