Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.50517 * 305.00262 * 12 10 9 14 14 C 1.53095 * 109.50651 * 65.09134 * 12 10 9 15 15 N 1.47015 * 109.25590 * 176.73697 * 14 12 10 16 16 C 1.47010 * 110.79075 * 301.45199 * 15 14 12 17 17 C 1.53103 * 109.25801 * 58.59110 * 16 15 14 18 18 O 1.43014 * 109.50432 * 184.91825 * 12 10 9 19 19 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 21 21 H 1.09006 * 109.50488 * 296.72284 * 14 12 10 22 22 H 1.08995 * 109.50523 * 56.84697 * 14 12 10 23 23 H 1.00903 * 110.95788 * 65.22792 * 15 14 12 24 24 H 1.08995 * 109.50971 * 298.65764 * 16 15 14 25 25 H 1.09002 * 109.54434 * 178.54670 * 16 15 14 26 26 H 1.08997 * 109.50433 * 183.21370 * 17 16 15 27 27 H 1.09005 * 109.50512 * 63.08933 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.5518 -4.8833 0.8440 14 6 0.4614 -5.0021 -1.3063 15 7 -0.2085 -6.3105 -1.3339 16 6 0.7704 -7.4005 -1.2126 17 6 1.5489 -7.2369 0.0955 18 8 2.1683 -5.9480 0.1176 19 1 -0.4850 0.8401 0.0004 20 1 0.3534 -2.3906 0.0024 21 1 -0.2840 -4.2093 -1.3708 22 1 1.1471 -4.9272 -2.1502 23 1 -0.9099 -6.3722 -0.6111 24 1 1.4617 -7.3644 -2.0545 25 1 0.2506 -8.3587 -1.2094 26 1 2.3145 -8.0098 0.1625 27 1 0.8652 -7.3267 0.9397 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043801153.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -79.682831 kcal Electronic energy + Delta-G solvation = -13025.501710 eV Core-core repulsion = 10590.293429 eV Total energy + Delta-G solvation = -2435.208281 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.63102 -37.55695 -34.43054 -33.83865 -31.65511 -30.71942 -26.64272 -24.67367 -23.79511 -21.28664 -19.43773 -18.03702 -16.53532 -16.03969 -15.62270 -15.31570 -14.73361 -14.63814 -13.85332 -13.57416 -12.93970 -12.41906 -12.24276 -11.62420 -11.53962 -11.24605 -11.06630 -10.92164 -10.40944 -10.25902 -10.03781 -9.56327 -8.58538 -8.03873 -8.00419 -6.45991 -3.87278 3.16004 3.25363 3.31086 3.74333 3.80019 4.22036 4.24465 4.88073 4.96145 5.12452 5.20721 5.27525 5.34130 5.44458 5.70927 5.81614 5.92047 6.14830 6.23450 6.85746 7.30218 7.34986 7.51818 8.00501 8.55554 9.12862 9.46151 9.97665 10.71524 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.072111 B = 0.008499 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.198551 B = 3293.629195 C = 3558.842302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.556 5.556 10 C 0.449 3.551 11 O -0.574 6.574 12 C 0.046 3.954 13 H 0.068 0.932 14 C 0.033 3.967 15 N -0.681 5.681 16 C 0.019 3.981 17 C 0.018 3.982 18 O -0.349 6.349 19 H 0.273 0.727 20 H 0.393 0.607 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.339 0.661 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.411 -9.942 -0.642 10.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.193 5.193 10 C 0.233 3.767 11 O -0.457 6.457 12 C -0.018 4.018 13 H 0.085 0.915 14 C -0.097 4.097 15 N -0.310 5.310 16 C -0.111 4.111 17 C -0.061 4.061 18 O -0.267 6.267 19 H 0.083 0.917 20 H 0.226 0.774 21 H 0.112 0.888 22 H 0.106 0.894 23 H 0.156 0.844 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.549 -9.781 -1.342 10.196 hybrid contribution -0.298 0.791 1.023 1.327 sum -2.847 -8.990 -0.319 9.436 Atomic orbital electron populations 1.69609 1.05955 1.28333 1.50188 1.25273 0.95661 0.99744 0.97061 0.85823 0.79265 0.80573 0.78443 1.20347 1.19319 1.20842 1.19724 0.93459 0.81948 1.47909 0.87778 1.41749 1.09149 1.04161 1.64258 1.19289 0.88170 0.83925 0.85277 1.90543 1.13651 1.86754 1.54793 1.22586 0.92115 0.88784 0.98284 0.91474 1.22657 0.98369 0.91516 0.97176 1.60907 1.14601 1.02429 1.53055 1.22685 0.95281 0.95111 0.98008 1.23304 0.98586 0.86908 0.97260 1.88225 1.31745 1.12474 1.94232 0.91740 0.77377 0.88767 0.89408 0.84355 0.89839 0.89857 0.88419 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.48 15 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 15 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 15 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 15 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 15 9 N -0.56 -14.21 5.25 -10.96 -0.06 -14.26 15 10 C 0.45 11.20 7.13 -10.98 -0.08 11.12 15 11 O -0.57 -16.82 16.08 -14.28 -0.23 -17.05 15 12 C 0.05 0.88 3.21 -27.83 -0.09 0.79 15 13 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 14 C 0.03 0.54 6.00 -3.71 -0.02 0.52 15 15 N -0.68 -9.16 6.93 -113.50 -0.79 -9.95 15 16 C 0.02 0.23 6.77 -3.71 -0.03 0.21 15 17 C 0.02 0.25 7.01 37.21 0.26 0.51 15 18 O -0.35 -6.84 10.01 -55.06 -0.55 -7.39 15 19 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 20 H 0.39 9.43 7.77 -40.82 -0.32 9.11 15 21 H 0.09 1.51 8.02 -51.93 -0.42 1.09 15 22 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 23 H 0.34 3.92 8.89 -39.29 -0.35 3.57 15 24 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 25 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 LS Contribution 236.49 15.07 3.56 3.56 Total: -1.00 -32.21 236.49 -5.68 -37.90 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.13 Total: 9.61 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.20 Total: 5.12 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.12 Total: -47.69 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.78 Total: -24.44 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.21 -5.68 -37.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043801153.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.785 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds