Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.50517 * 305.00262 * 12 10 9 14 14 C 1.53095 * 109.50651 * 65.09134 * 12 10 9 15 15 N 1.47015 * 109.25590 * 176.73697 * 14 12 10 16 16 C 1.47010 * 110.79075 * 301.45199 * 15 14 12 17 17 C 1.53103 * 109.25801 * 58.59110 * 16 15 14 18 18 O 1.43014 * 109.50432 * 184.91825 * 12 10 9 19 19 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 21 21 H 1.09006 * 109.50488 * 296.72284 * 14 12 10 22 22 H 1.08995 * 109.50523 * 56.84697 * 14 12 10 23 23 H 1.00903 * 110.95788 * 65.22792 * 15 14 12 24 24 H 1.08995 * 109.50971 * 298.65764 * 16 15 14 25 25 H 1.09002 * 109.54434 * 178.54670 * 16 15 14 26 26 H 1.08997 * 109.50433 * 183.21370 * 17 16 15 27 27 H 1.09005 * 109.50512 * 63.08933 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.5518 -4.8833 0.8440 14 6 0.4614 -5.0021 -1.3063 15 7 -0.2085 -6.3105 -1.3339 16 6 0.7704 -7.4005 -1.2126 17 6 1.5489 -7.2369 0.0955 18 8 2.1683 -5.9480 0.1176 19 1 -0.4850 0.8401 0.0004 20 1 0.3534 -2.3906 0.0024 21 1 -0.2840 -4.2093 -1.3708 22 1 1.1471 -4.9272 -2.1502 23 1 -0.9099 -6.3722 -0.6111 24 1 1.4617 -7.3644 -2.0545 25 1 0.2506 -8.3587 -1.2094 26 1 2.3145 -8.0098 0.1625 27 1 0.8652 -7.3267 0.9397 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043801153.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -106.076805 kcal Electronic energy + Delta-G solvation = -13026.646239 eV Core-core repulsion = 10590.293429 eV Total energy + Delta-G solvation = -2436.352810 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12363 -39.35023 -36.14126 -35.46996 -33.53064 -32.24110 -28.15360 -26.41749 -25.17291 -22.52180 -21.28001 -20.08040 -18.16173 -17.43959 -17.04499 -16.70542 -16.56830 -15.89399 -15.67134 -15.21886 -14.76329 -13.85148 -13.67082 -13.51223 -12.98824 -12.78825 -12.50658 -12.36586 -12.13012 -12.10095 -11.58501 -11.33263 -10.45946 -10.09889 -9.31652 -8.51845 -6.01965 1.35755 1.41804 1.54497 1.89307 2.18058 2.49978 3.09593 3.13803 3.40943 3.66121 3.90183 4.07612 4.16762 4.23753 4.42921 4.50223 4.72922 4.85369 4.99773 5.36651 5.70823 5.86020 6.11383 6.34035 6.52578 7.04973 7.43273 7.98871 8.65083 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.072111 B = 0.008499 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.198551 B = 3293.629195 C = 3558.842302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.341 4.341 8 H 0.078 0.922 9 N -0.556 5.556 10 C 0.440 3.560 11 O -0.628 6.628 12 C 0.058 3.942 13 H 0.091 0.909 14 C 0.045 3.955 15 N -0.674 5.674 16 C 0.022 3.978 17 C 0.011 3.989 18 O -0.389 6.389 19 H 0.281 0.719 20 H 0.399 0.601 21 H 0.098 0.902 22 H 0.066 0.934 23 H 0.355 0.645 24 H 0.071 0.929 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -10.510 -0.542 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.206 4.206 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.193 5.193 10 C 0.226 3.774 11 O -0.514 6.514 12 C -0.005 4.005 13 H 0.108 0.892 14 C -0.086 4.086 15 N -0.304 5.304 16 C -0.108 4.108 17 C -0.066 4.066 18 O -0.308 6.308 19 H 0.091 0.909 20 H 0.234 0.766 21 H 0.116 0.884 22 H 0.084 0.916 23 H 0.174 0.826 24 H 0.089 0.911 25 H 0.141 0.859 26 H 0.135 0.865 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.932 -10.373 -1.237 11.162 hybrid contribution 0.092 0.886 1.005 1.343 sum -3.840 -9.487 -0.232 10.237 Atomic orbital electron populations 1.69655 1.06783 1.29678 1.49224 1.26055 0.96587 1.02332 0.95654 0.84899 0.77896 0.76588 0.78773 1.19493 1.19855 1.19141 1.19685 0.92785 0.83751 1.50815 0.90392 1.41753 1.09345 1.04109 1.64086 1.20342 0.87945 0.85660 0.83456 1.90494 1.16179 1.87855 1.56904 1.22408 0.91394 0.86040 1.00643 0.89177 1.22437 0.97754 0.93640 0.94726 1.60896 1.14727 1.01050 1.53708 1.22771 0.95064 0.96180 0.96769 1.23664 0.99751 0.84452 0.98774 1.88165 1.33483 1.14530 1.94617 0.90935 0.76594 0.88381 0.91576 0.82606 0.91057 0.85938 0.86525 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.40 13.05 21.66 0.28 -48.12 15 2 C -0.01 -0.29 5.50 84.93 0.47 0.18 15 3 Si 1.00 42.61 29.55 68.60 2.03 44.64 15 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 7 C -0.34 -19.62 9.68 84.04 0.81 -18.80 15 8 H 0.08 4.82 7.16 -2.92 -0.02 4.80 15 9 N -0.56 -29.03 5.25 -306.98 -1.61 -30.65 15 10 C 0.44 22.49 7.13 87.66 0.63 23.12 15 11 O -0.63 -38.30 16.08 15.91 0.26 -38.05 15 12 C 0.06 2.22 3.21 29.88 0.10 2.31 15 13 H 0.09 2.99 8.14 -2.39 -0.02 2.97 15 14 C 0.05 1.46 6.00 86.31 0.52 1.98 15 15 N -0.67 -16.32 6.93 -513.00 -3.55 -19.87 15 16 C 0.02 0.46 6.77 86.32 0.58 1.04 15 17 C 0.01 0.27 7.01 72.02 0.50 0.78 15 18 O -0.39 -15.00 10.01 -130.02 -1.30 -16.30 15 19 H 0.28 13.85 8.31 -92.71 -0.77 13.08 15 20 H 0.40 19.35 7.77 -92.71 -0.72 18.63 15 21 H 0.10 3.05 8.02 -2.38 -0.02 3.03 15 22 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.35 6.92 8.89 -89.69 -0.80 6.12 15 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.12 1.71 8.14 -2.39 -0.02 1.70 15 26 H 0.12 2.38 8.14 -2.39 -0.02 2.36 15 27 H 0.07 1.39 8.14 -2.38 -0.02 1.37 15 Total: -1.00 -70.63 236.49 -0.62 -71.25 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -0.32 Total: 26.49 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 3.61 Total: 10.60 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -4.88 Total: -98.63 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -1.05 Total: -54.35 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -70.63 -0.62 -71.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043801153.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.827 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds