Wall clock time and date at job start Mon Mar 30 2020 03:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.42905 * 113.99942 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46849 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.43642 * 305.69651 * 13 12 11 15 15 C 1.54816 * 110.48392 * 183.15544 * 13 12 11 16 16 C 1.55226 * 101.98364 * 220.51593 * 15 13 12 17 17 O 1.44381 * 103.56813 * 36.88311 * 16 15 13 18 18 C 1.43739 * 106.97487 * 320.00909 * 17 16 15 19 19 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 21 21 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 22 22 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 23 23 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 24 24 H 1.09001 * 109.46949 * 300.00002 * 12 11 10 25 25 H 1.08996 * 109.47291 * 60.00138 * 12 11 10 26 26 H 1.08995 * 110.90539 * 338.63994 * 15 13 12 27 27 H 1.08996 * 110.90388 * 102.24408 * 15 13 12 28 28 H 1.09001 * 110.52379 * 278.38640 * 16 15 13 29 29 H 1.09005 * 110.64355 * 155.43624 * 16 15 13 30 30 H 1.09003 * 109.88359 * 267.08907 * 18 17 16 31 31 H 1.08998 * 110.00604 * 146.00365 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 8 1.5307 -4.8996 0.0076 12 6 2.3707 -6.0558 0.0063 13 6 1.5034 -7.3162 0.0111 14 1 0.7996 -7.2907 0.8431 15 6 2.3895 -8.5833 0.0897 16 6 1.6699 -9.5415 -0.8970 17 8 1.2205 -8.6654 -1.9530 18 6 0.7521 -7.4593 -1.3268 19 1 -0.4850 0.8401 0.0004 20 1 0.6281 -2.5552 0.8979 21 1 0.6206 -2.5586 -0.8820 22 1 2.8678 -3.6059 -0.8902 23 1 2.8760 -3.6028 0.8897 24 1 2.9965 -6.0492 -0.8862 25 1 3.0033 -6.0462 0.8938 26 1 3.4041 -8.3697 -0.2462 27 1 2.3936 -8.9930 1.0997 28 1 0.8215 -10.0236 -0.4113 29 1 2.3649 -10.2858 -1.2856 30 1 -0.3202 -7.5287 -1.1441 31 1 0.9645 -6.6013 -1.9645 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049690054.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:17 Heat of formation + Delta-G solvation = -133.540193 kcal Electronic energy + Delta-G solvation = -12634.785699 eV Core-core repulsion = 10300.782331 eV Total energy + Delta-G solvation = -2334.003368 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.51363 -38.68127 -35.45136 -33.90580 -31.89526 -30.26487 -27.09213 -26.01147 -23.40881 -22.89831 -21.42841 -18.72901 -17.82100 -17.14505 -16.93216 -16.55883 -16.52956 -15.96290 -15.12095 -14.54177 -14.32494 -13.72417 -13.58527 -13.01673 -12.87215 -12.59781 -12.49339 -12.35625 -12.12691 -11.85961 -11.60394 -11.44897 -11.34422 -10.70039 -10.62611 -10.42292 -8.24783 -6.38106 1.41054 1.42160 1.55712 2.36798 2.80190 3.01952 3.09300 3.56685 3.85999 3.93600 4.23554 4.33130 4.35639 4.40093 4.43056 4.59795 4.70111 4.81059 4.86905 4.89691 4.92432 5.03539 5.17766 5.35865 5.56247 5.71530 5.90694 6.10292 6.40344 6.78138 7.32008 8.88598 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.093673 B = 0.005414 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.840709 B = 5170.180807 C = 5292.545059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.026 3.974 10 C 0.085 3.915 11 O -0.414 6.414 12 C 0.064 3.936 13 C -0.120 4.120 14 H 0.092 0.908 15 C -0.139 4.139 16 C 0.040 3.960 17 O -0.405 6.405 18 C 0.052 3.948 19 H 0.266 0.734 20 H -0.005 1.005 21 H -0.007 1.007 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 -16.212 0.866 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.086 0.914 9 C -0.011 4.011 10 C 0.009 3.991 11 O -0.334 6.334 12 C -0.013 4.013 13 C -0.139 4.139 14 H 0.110 0.890 15 C -0.177 4.177 16 C -0.036 4.036 17 O -0.324 6.324 18 C -0.024 4.024 19 H 0.075 0.925 20 H 0.013 0.987 21 H 0.012 0.988 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.568 -16.164 0.640 17.108 hybrid contribution 0.147 1.125 0.159 1.146 sum 5.715 -15.039 0.799 16.108 Atomic orbital electron populations 1.70135 1.08071 1.28056 1.50962 1.26057 0.95815 1.03705 0.94240 0.85242 0.79017 0.77928 0.77889 1.18202 1.20258 1.20154 1.21513 0.93762 0.91461 1.51693 0.91398 1.18950 0.94669 0.91958 0.95498 1.22470 0.94760 0.82643 0.99192 1.87865 1.35534 1.14520 1.95486 1.22663 0.92997 0.84788 1.00805 1.22564 0.98435 0.94243 0.98618 0.88976 1.23194 0.99407 0.92972 1.02078 1.23840 0.98675 0.93216 0.87837 1.88839 1.83384 1.28010 1.32199 1.23158 0.98112 0.87435 0.93738 0.92521 0.98678 0.98838 0.93801 0.93430 0.93156 0.91979 0.89745 0.87465 0.90948 0.86975 0.92063 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.98 44.14 29.54 68.60 2.03 46.17 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 8 H 0.07 3.69 7.74 -2.92 -0.02 3.66 16 9 C 0.03 1.48 5.34 29.85 0.16 1.64 16 10 C 0.09 3.78 5.88 71.98 0.42 4.20 16 11 O -0.41 -16.79 10.17 -148.98 -1.51 -18.31 16 12 C 0.06 1.88 5.01 71.98 0.36 2.24 16 13 C -0.12 -2.94 3.32 -9.80 -0.03 -2.98 16 14 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.14 -2.37 6.73 31.98 0.22 -2.15 16 16 C 0.04 0.71 7.72 72.75 0.56 1.27 16 17 O -0.40 -10.84 11.52 -148.98 -1.72 -12.56 16 18 C 0.05 1.45 7.25 72.36 0.52 1.98 16 19 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 20 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 21 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 22 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 1.37 7.87 -2.39 -0.02 1.35 16 27 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 2.24 7.65 -2.39 -0.02 2.22 16 Total: -1.00 -67.63 262.78 3.06 -64.57 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 1.08 Total: 2.28 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 2.91 Total: -24.71 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.28 Total: -57.44 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -3.23 Total: -30.86 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.63 3.06 -64.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049690054.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.972 kcal (2) G-P(sol) polarization free energy of solvation -67.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds