Wall clock time and date at job start Mon Mar 30 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.42901 * 114.00184 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47110 * 179.97438 * 12 11 10 14 14 H 1.09003 * 110.74868 * 54.30358 * 13 12 11 15 15 C 1.55300 * 110.84694 * 177.77047 * 13 12 11 16 16 C 1.55207 * 100.82649 * 152.18174 * 15 13 12 17 17 O 1.43647 * 105.25953 * 323.81618 * 16 15 13 18 18 C 1.43239 * 109.96973 * 24.28907 * 17 16 15 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 21 21 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 22 22 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 23 23 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 24 24 H 1.08998 * 109.47198 * 300.00243 * 12 11 10 25 25 H 1.09005 * 109.46607 * 60.00185 * 12 11 10 26 26 H 1.08999 * 111.12695 * 270.24704 * 15 13 12 27 27 H 1.09003 * 111.12635 * 34.41211 * 15 13 12 28 28 H 1.09007 * 110.36828 * 204.80352 * 16 15 13 29 29 H 1.09001 * 110.21115 * 82.75642 * 16 15 13 30 30 H 1.09004 * 109.82795 * 238.77023 * 18 17 16 31 31 H 1.08997 * 109.90816 * 117.84020 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5309 -4.8996 -0.0001 12 6 2.3708 -6.0557 -0.0007 13 6 1.5035 -7.3162 -0.0007 14 1 0.7943 -7.2970 -0.8282 15 6 2.3850 -8.5936 -0.0578 16 6 1.4644 -9.6155 0.6612 17 8 0.8045 -8.8677 1.6951 18 6 0.7700 -7.4785 1.3480 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 0.8902 21 1 0.6248 -2.5571 -0.8897 22 1 2.8720 -3.6043 -0.8895 23 1 2.8719 -3.6043 0.8905 24 1 3.0000 -6.0472 -0.8907 25 1 3.0001 -6.0481 0.8893 26 1 2.5786 -8.8915 -1.0882 27 1 3.3167 -8.4528 0.4901 28 1 2.0575 -10.4200 1.0961 29 1 0.7331 -10.0208 -0.0381 30 1 1.2748 -6.8927 2.1163 31 1 -0.2634 -7.1461 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049690055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:21 Heat of formation + Delta-G solvation = -112.624117 kcal Electronic energy + Delta-G solvation = -12609.785367 eV Core-core repulsion = 10276.688988 eV Total energy + Delta-G solvation = -2333.096379 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.48053 -37.20614 -33.48291 -32.63604 -30.13280 -29.18688 -25.55612 -24.26400 -22.38648 -21.04116 -20.40907 -17.00627 -16.55765 -15.97760 -15.33536 -15.22892 -14.72108 -14.51618 -13.68682 -13.30167 -12.86069 -12.39424 -12.10811 -11.69212 -11.34123 -11.21943 -10.99748 -10.89336 -10.61159 -10.45549 -10.24008 -9.52212 -9.49935 -9.20262 -8.94864 -8.37792 -6.04624 -4.08372 3.29178 3.36181 3.40067 3.82645 4.08583 4.42123 4.49083 4.81898 4.94984 5.17895 5.23788 5.31581 5.40562 5.53408 5.60538 5.69421 5.76720 5.86161 6.02477 6.18411 6.24591 6.26603 6.85738 6.96611 7.51392 7.77040 7.80169 8.08157 8.34209 8.98430 9.55552 11.07094 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.095880 B = 0.005364 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.962152 B = 5218.564440 C = 5369.329267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.069 3.931 11 O -0.392 6.392 12 C 0.071 3.929 13 C -0.120 4.120 14 H 0.092 0.908 15 C -0.150 4.150 16 C 0.052 3.948 17 O -0.390 6.390 18 C 0.059 3.941 19 H 0.262 0.738 20 H 0.025 0.975 21 H 0.024 0.976 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -15.367 -0.305 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.006 4.006 11 O -0.312 6.312 12 C -0.006 4.006 13 C -0.139 4.139 14 H 0.111 0.889 15 C -0.188 4.188 16 C -0.024 4.024 17 O -0.309 6.309 18 C -0.017 4.017 19 H 0.071 0.929 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.226 -15.333 -0.116 15.905 hybrid contribution 0.836 1.105 -0.277 1.413 sum 5.061 -14.228 -0.393 15.106 Atomic orbital electron populations 1.69992 1.06089 1.26686 1.50189 1.25001 0.94876 0.99322 0.95089 0.86467 0.79993 0.83455 0.77669 1.19706 1.20898 1.20881 1.21094 0.93044 0.90562 1.51565 0.92498 1.19077 0.94256 0.89462 0.98469 1.22891 0.96399 0.83108 0.98242 1.87921 1.34075 1.13876 1.95298 1.22286 0.92658 0.85772 0.99868 1.22714 0.98058 0.93906 0.99208 0.88920 1.23309 0.99120 0.94424 1.01954 1.23365 0.94364 0.94606 0.90096 1.88387 1.79536 1.18976 1.44029 1.23184 1.01096 0.81800 0.95641 0.92876 0.95689 0.95757 0.94687 0.94643 0.93576 0.93664 0.89692 0.90189 0.89918 0.92278 0.90824 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.52 5.88 37.16 0.22 1.74 16 11 O -0.39 -7.88 10.24 -35.23 -0.36 -8.24 16 12 C 0.07 1.08 5.26 37.16 0.20 1.27 16 13 C -0.12 -1.55 3.26 -88.68 -0.29 -1.84 16 14 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.15 -1.48 6.64 -24.34 -0.16 -1.64 16 16 C 0.05 0.53 7.78 38.33 0.30 0.83 16 17 O -0.39 -5.41 11.36 -35.23 -0.40 -5.81 16 18 C 0.06 0.83 7.31 37.88 0.28 1.10 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.64 8.01 -51.93 -0.42 0.23 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.06 7.72 -51.93 -0.40 0.66 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 263.03 15.07 3.96 3.96 Total: -1.00 -31.14 263.03 -6.11 -37.24 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -5.00 Total: -5.68 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.02 Total: -11.75 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.76 Total: -14.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.14 -6.11 -37.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049690055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.380 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds