Wall clock time and date at job start Mon Mar 30 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.42901 * 114.00184 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47110 * 179.97438 * 12 11 10 14 14 H 1.09003 * 110.74868 * 54.30358 * 13 12 11 15 15 C 1.55300 * 110.84694 * 177.77047 * 13 12 11 16 16 C 1.55207 * 100.82649 * 152.18174 * 15 13 12 17 17 O 1.43647 * 105.25953 * 323.81618 * 16 15 13 18 18 C 1.43239 * 109.96973 * 24.28907 * 17 16 15 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 21 21 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 22 22 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 23 23 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 24 24 H 1.08998 * 109.47198 * 300.00243 * 12 11 10 25 25 H 1.09005 * 109.46607 * 60.00185 * 12 11 10 26 26 H 1.08999 * 111.12695 * 270.24704 * 15 13 12 27 27 H 1.09003 * 111.12635 * 34.41211 * 15 13 12 28 28 H 1.09007 * 110.36828 * 204.80352 * 16 15 13 29 29 H 1.09001 * 110.21115 * 82.75642 * 16 15 13 30 30 H 1.09004 * 109.82795 * 238.77023 * 18 17 16 31 31 H 1.08997 * 109.90816 * 117.84020 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5309 -4.8996 -0.0001 12 6 2.3708 -6.0557 -0.0007 13 6 1.5035 -7.3162 -0.0007 14 1 0.7943 -7.2970 -0.8282 15 6 2.3850 -8.5936 -0.0578 16 6 1.4644 -9.6155 0.6612 17 8 0.8045 -8.8677 1.6951 18 6 0.7700 -7.4785 1.3480 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 0.8902 21 1 0.6248 -2.5571 -0.8897 22 1 2.8720 -3.6043 -0.8895 23 1 2.8719 -3.6043 0.8905 24 1 3.0000 -6.0472 -0.8907 25 1 3.0001 -6.0481 0.8893 26 1 2.5786 -8.8915 -1.0882 27 1 3.3167 -8.4528 0.4901 28 1 2.0575 -10.4200 1.0961 29 1 0.7331 -10.0208 -0.0381 30 1 1.2748 -6.8927 2.1163 31 1 -0.2634 -7.1461 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049690055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:21 Heat of formation + Delta-G solvation = -133.628552 kcal Electronic energy + Delta-G solvation = -12610.696188 eV Core-core repulsion = 10276.688988 eV Total energy + Delta-G solvation = -2334.007200 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50368 -38.70287 -35.45469 -33.94825 -31.89738 -30.34129 -27.10393 -25.97979 -23.29316 -22.88066 -21.58052 -18.73625 -17.95100 -17.03652 -16.96822 -16.64329 -16.51500 -15.73768 -15.05160 -14.53949 -14.31334 -14.10615 -13.58933 -13.04975 -12.88591 -12.56527 -12.48756 -12.34335 -12.13416 -11.81098 -11.68735 -11.44022 -11.34300 -10.67412 -10.52344 -10.42042 -8.24570 -6.37923 1.41237 1.42319 1.55830 2.36791 2.74930 2.98891 3.09574 3.49519 3.84523 3.94290 4.23061 4.31027 4.34536 4.40165 4.43460 4.60429 4.63515 4.79342 4.89165 4.91697 4.92746 4.99580 5.21942 5.36401 5.56638 5.71935 6.00920 6.10441 6.40903 6.78511 7.32268 8.88808 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.095880 B = 0.005364 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.962152 B = 5218.564440 C = 5369.329267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.026 3.974 10 C 0.085 3.915 11 O -0.415 6.415 12 C 0.066 3.934 13 C -0.119 4.119 14 H 0.089 0.911 15 C -0.138 4.138 16 C 0.044 3.956 17 O -0.410 6.410 18 C 0.058 3.942 19 H 0.266 0.734 20 H -0.007 1.007 21 H -0.006 1.006 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 -15.859 -0.730 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.087 0.913 9 C -0.011 4.011 10 C 0.009 3.991 11 O -0.335 6.335 12 C -0.011 4.011 13 C -0.138 4.138 14 H 0.108 0.892 15 C -0.175 4.175 16 C -0.032 4.032 17 O -0.330 6.330 18 C -0.019 4.019 19 H 0.075 0.925 20 H 0.012 0.988 21 H 0.012 0.988 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.128 0.872 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.193 -15.855 -0.544 17.031 hybrid contribution 0.181 1.148 -0.139 1.171 sum 6.373 -14.707 -0.684 16.043 Atomic orbital electron populations 1.70135 1.08092 1.28047 1.50988 1.26060 0.95804 1.03720 0.94258 0.85244 0.79043 0.77935 0.77864 1.18146 1.20207 1.20277 1.21518 0.93780 0.91438 1.51648 0.91332 1.18953 0.94699 0.92023 0.95466 1.22473 0.94726 0.82566 0.99286 1.87876 1.35567 1.14552 1.95519 1.22581 0.92869 0.84428 1.01198 1.22714 0.98398 0.94420 0.98285 0.89243 1.23311 0.98588 0.92058 1.03586 1.23649 0.94872 0.94837 0.89819 1.88364 1.80223 1.18825 1.45597 1.23106 1.00415 0.82226 0.96150 0.92537 0.98846 0.98772 0.93395 0.93607 0.91730 0.92639 0.87249 0.89313 0.87737 0.91218 0.91792 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.98 43.99 29.54 68.60 2.03 46.02 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.03 1.44 5.34 29.85 0.16 1.60 16 10 C 0.09 3.73 5.88 71.98 0.42 4.15 16 11 O -0.41 -16.64 10.24 -148.98 -1.53 -18.16 16 12 C 0.07 1.87 5.26 71.98 0.38 2.25 16 13 C -0.12 -2.92 3.26 -9.54 -0.03 -2.95 16 14 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.14 -2.30 6.64 32.14 0.21 -2.09 16 16 C 0.04 0.79 7.78 72.74 0.57 1.36 16 17 O -0.41 -11.00 11.36 -148.98 -1.69 -12.69 16 18 C 0.06 1.60 7.31 72.45 0.53 2.13 16 19 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 20 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 21 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.47 8.01 -2.38 -0.02 1.46 16 26 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.36 8.04 -2.39 -0.02 1.34 16 28 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.87 7.72 -2.38 -0.02 1.85 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -67.52 263.03 3.10 -64.42 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.08 Total: 2.12 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 2.94 Total: -24.29 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.28 Total: -57.41 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -3.22 Total: -30.86 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.52 3.10 -64.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049690055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.208 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds