Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00146 * 2 1 4 4 H 1.48500 * 109.46815 * 239.99541 * 3 2 1 5 5 H 1.48496 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47243 * 119.99712 * 3 2 1 7 7 C 1.37884 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99550 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00298 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47330 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00215 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47643 * 180.02562 * 11 10 9 13 13 C 1.53175 * 109.54388 * 294.56185 * 12 11 10 14 14 C 1.53094 * 109.16661 * 183.14993 * 13 12 11 15 15 O 1.42898 * 109.41211 * 57.60371 * 14 13 12 16 16 C 1.42897 * 114.10001 * 298.84343 * 15 14 13 17 17 C 1.53089 * 109.41656 * 61.16248 * 16 15 14 18 18 H 0.97001 * 119.99481 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47497 * 59.99448 * 9 7 2 20 20 H 1.09000 * 109.47021 * 299.99618 * 9 7 2 21 21 H 1.09002 * 109.47116 * 60.00325 * 11 10 9 22 22 H 1.09007 * 109.47449 * 300.00063 * 11 10 9 23 23 H 1.09004 * 109.61242 * 54.77604 * 12 11 10 24 24 H 1.09004 * 109.52259 * 303.05258 * 13 12 11 25 25 H 1.09006 * 109.52330 * 63.24092 * 13 12 11 26 26 H 1.09006 * 109.47665 * 297.62062 * 14 13 12 27 27 H 1.08993 * 109.47955 * 177.58818 * 14 13 12 28 28 H 1.09002 * 109.48425 * 301.17758 * 16 15 14 29 29 H 1.09001 * 109.49443 * 181.15303 * 16 15 14 30 30 H 1.08997 * 109.52675 * 182.48845 * 17 16 15 31 31 H 1.08995 * 109.52428 * 62.29514 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6478 -5.9563 0.0017 13 6 3.4345 -5.8943 -1.3112 14 6 4.4627 -7.0283 -1.3351 15 8 3.7920 -8.2808 -1.1823 16 6 3.0785 -8.4143 0.0486 17 6 1.9947 -7.3361 0.1281 18 1 -0.4849 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 0.9446 -4.9827 -0.8887 22 1 0.9451 -4.9823 0.8914 23 1 3.3251 -5.7952 0.8405 24 1 2.7496 -6.0059 -2.1518 25 1 3.9479 -4.9354 -1.3832 26 1 5.1716 -6.8934 -0.5181 27 1 4.9962 -7.0152 -2.2854 28 1 3.7693 -8.2976 0.8837 29 1 2.6150 -9.3997 0.0954 30 1 1.4784 -7.4083 1.0853 31 1 1.2807 -7.4768 -0.6834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052154152.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = -117.005080 kcal Electronic energy + Delta-G solvation = -12893.039114 eV Core-core repulsion = 10559.752763 eV Total energy + Delta-G solvation = -2333.286352 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.30822 -36.75336 -33.89885 -32.56138 -31.00116 -27.92857 -26.25171 -23.45956 -22.54258 -22.05234 -19.85955 -16.51916 -16.00284 -15.97162 -15.44118 -15.07477 -14.62242 -14.40112 -13.74742 -13.34859 -13.04931 -12.24977 -12.12418 -11.57002 -11.26555 -11.19582 -10.92080 -10.83888 -10.50390 -10.33985 -10.18850 -10.02871 -9.38376 -9.12466 -8.82771 -8.18320 -6.12016 -4.14080 3.31311 3.33989 3.37786 3.91567 4.31972 4.63391 4.88891 4.98683 5.12818 5.22265 5.24253 5.42563 5.52651 5.58437 5.72857 5.80681 5.90712 6.01804 6.09601 6.19809 6.28501 6.45323 6.58332 7.09621 7.22988 7.41589 7.77850 8.14121 8.57130 8.99064 9.50837 10.99514 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.074629 B = 0.006315 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.097077 B = 4432.485271 C = 4682.895218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.396 6.396 11 C 0.069 3.931 12 C -0.087 4.087 13 C -0.146 4.146 14 C 0.060 3.940 15 O -0.389 6.389 16 C 0.064 3.936 17 C -0.150 4.150 18 H 0.265 0.735 19 H 0.005 0.995 20 H 0.004 0.996 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.911 -13.376 -0.295 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.316 6.316 11 C -0.008 4.008 12 C -0.105 4.105 13 C -0.184 4.184 14 C -0.016 4.016 15 O -0.307 6.307 16 C -0.013 4.013 17 C -0.188 4.188 18 H 0.074 0.926 19 H 0.022 0.978 20 H 0.022 0.978 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.954 -13.359 -0.435 14.254 hybrid contribution -0.104 1.167 0.251 1.199 sum 4.849 -12.191 -0.184 13.122 Atomic orbital electron populations 1.69958 1.06126 1.27290 1.50418 1.24958 0.94985 0.99452 0.95104 0.86382 0.79308 0.81867 0.78843 1.19997 1.21121 1.20006 1.21022 0.94009 0.89397 1.51025 0.91616 1.20185 0.88766 0.83568 0.95349 1.87821 1.35599 1.12964 1.95184 1.22242 0.94158 0.85371 0.99049 1.21149 0.97598 0.93234 0.98558 1.22170 0.98839 0.99600 0.97781 1.22638 0.93964 0.83405 1.01611 1.87882 1.67894 1.36086 1.38882 1.22527 0.93311 0.98812 0.86668 1.22189 0.98873 0.94883 1.02866 0.92576 0.97759 0.97785 0.94545 0.94585 0.90584 0.91359 0.89598 0.93309 0.89066 0.93312 0.89140 0.90846 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -15.35 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.45 5.69 36.00 0.20 5.66 16 10 O -0.40 -9.66 9.95 -35.23 -0.35 -10.01 16 11 C 0.07 1.32 5.32 37.16 0.20 1.52 16 12 C -0.09 -1.33 2.51 -90.44 -0.23 -1.56 16 13 C -0.15 -2.17 5.29 -26.59 -0.14 -2.31 16 14 C 0.06 0.76 6.84 37.21 0.25 1.02 16 15 O -0.39 -5.23 10.76 -35.23 -0.38 -5.61 16 16 C 0.06 0.72 6.84 37.20 0.25 0.97 16 17 C -0.15 -1.86 5.42 -26.59 -0.14 -2.00 16 18 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 19 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 20 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 259.43 15.07 3.91 3.91 Total: -1.00 -31.34 259.43 -6.16 -37.49 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -5.03 Total: -5.46 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.02 Total: -10.85 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.73 Total: -15.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.34 -6.16 -37.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052154152.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.512 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds