Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00146 * 2 1 4 4 H 1.48500 * 109.46815 * 239.99541 * 3 2 1 5 5 H 1.48496 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47243 * 119.99712 * 3 2 1 7 7 C 1.37884 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99550 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00298 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47330 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00215 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47643 * 180.02562 * 11 10 9 13 13 C 1.53175 * 109.54388 * 294.56185 * 12 11 10 14 14 C 1.53094 * 109.16661 * 183.14993 * 13 12 11 15 15 O 1.42898 * 109.41211 * 57.60371 * 14 13 12 16 16 C 1.42897 * 114.10001 * 298.84343 * 15 14 13 17 17 C 1.53089 * 109.41656 * 61.16248 * 16 15 14 18 18 H 0.97001 * 119.99481 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47497 * 59.99448 * 9 7 2 20 20 H 1.09000 * 109.47021 * 299.99618 * 9 7 2 21 21 H 1.09002 * 109.47116 * 60.00325 * 11 10 9 22 22 H 1.09007 * 109.47449 * 300.00063 * 11 10 9 23 23 H 1.09004 * 109.61242 * 54.77604 * 12 11 10 24 24 H 1.09004 * 109.52259 * 303.05258 * 13 12 11 25 25 H 1.09006 * 109.52330 * 63.24092 * 13 12 11 26 26 H 1.09006 * 109.47665 * 297.62062 * 14 13 12 27 27 H 1.08993 * 109.47955 * 177.58818 * 14 13 12 28 28 H 1.09002 * 109.48425 * 301.17758 * 16 15 14 29 29 H 1.09001 * 109.49443 * 181.15303 * 16 15 14 30 30 H 1.08997 * 109.52675 * 182.48845 * 17 16 15 31 31 H 1.08995 * 109.52428 * 62.29514 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6478 -5.9563 0.0017 13 6 3.4345 -5.8943 -1.3112 14 6 4.4627 -7.0283 -1.3351 15 8 3.7920 -8.2808 -1.1823 16 6 3.0785 -8.4143 0.0486 17 6 1.9947 -7.3361 0.1281 18 1 -0.4849 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 0.9446 -4.9827 -0.8887 22 1 0.9451 -4.9823 0.8914 23 1 3.3251 -5.7952 0.8405 24 1 2.7496 -6.0059 -2.1518 25 1 3.9479 -4.9354 -1.3832 26 1 5.1716 -6.8934 -0.5181 27 1 4.9962 -7.0152 -2.2854 28 1 3.7693 -8.2976 0.8837 29 1 2.6150 -9.3997 0.0954 30 1 1.4784 -7.4083 1.0853 31 1 1.2807 -7.4768 -0.6834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052154152.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -138.003934 kcal Electronic energy + Delta-G solvation = -12893.949693 eV Core-core repulsion = 10559.752763 eV Total energy + Delta-G solvation = -2334.196930 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41708 -38.52007 -35.41253 -34.57732 -32.01443 -29.85799 -27.88376 -24.70909 -24.32660 -23.53086 -21.03338 -18.68320 -17.44790 -17.12115 -16.88635 -16.69293 -16.32592 -15.63903 -15.37119 -14.78921 -14.49944 -13.85633 -13.43373 -13.18583 -12.95787 -12.81075 -12.63491 -12.25603 -12.17983 -11.81307 -11.59307 -11.29179 -11.18244 -10.88597 -10.46944 -10.27717 -8.34792 -6.48120 1.38915 1.43887 1.52458 2.32765 2.95732 2.98924 3.10107 3.70471 3.87403 4.01564 4.11446 4.30410 4.35878 4.46470 4.58611 4.67514 4.77473 4.78179 4.82176 4.90935 4.94604 5.11442 5.15232 5.24230 5.37076 5.51978 5.92124 6.27027 6.49344 6.77565 7.24074 8.77488 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.074629 B = 0.006315 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.097077 B = 4432.485271 C = 4682.895218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.209 3.791 10 O -0.407 6.407 11 C 0.060 3.940 12 C -0.083 4.083 13 C -0.146 4.146 14 C 0.066 3.934 15 O -0.401 6.401 16 C 0.061 3.939 17 C -0.144 4.144 18 H 0.272 0.728 19 H -0.016 1.016 20 H -0.014 1.014 21 H 0.036 0.964 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 -13.718 -0.050 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.081 0.919 9 C 0.134 3.866 10 O -0.327 6.327 11 C -0.017 4.017 12 C -0.102 4.102 13 C -0.184 4.184 14 C -0.011 4.011 15 O -0.320 6.320 16 C -0.015 4.015 17 C -0.182 4.182 18 H 0.080 0.920 19 H 0.002 0.998 20 H 0.003 0.997 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.931 -13.732 -0.188 14.959 hybrid contribution -0.468 1.200 0.182 1.301 sum 5.463 -12.533 -0.006 13.671 Atomic orbital electron populations 1.70069 1.07845 1.28825 1.50269 1.26005 0.95989 1.03510 0.93748 0.85199 0.78081 0.76490 0.79440 1.18951 1.19883 1.18902 1.21368 0.94157 0.90797 1.52634 0.91886 1.19824 0.88651 0.84753 0.93390 1.87784 1.35477 1.14301 1.95179 1.22591 0.95805 0.84001 0.99257 1.21163 0.96604 0.93583 0.98819 1.22146 0.99247 0.99766 0.97251 1.22630 0.93230 0.82240 1.02974 1.87875 1.68129 1.35997 1.40029 1.22714 0.93034 0.99433 0.86311 1.22177 0.99235 0.93089 1.03707 0.91953 0.99825 0.99675 0.94616 0.94004 0.90674 0.92052 0.91681 0.92272 0.87557 0.92140 0.86659 0.89259 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 2 C 0.01 0.35 5.46 84.66 0.46 0.82 16 3 Si 0.99 44.51 29.54 68.60 2.03 46.54 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -33.40 9.43 25.60 0.24 -33.16 16 8 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 9 C 0.21 12.05 5.69 71.23 0.41 12.45 16 10 O -0.41 -20.42 9.95 -148.98 -1.48 -21.90 16 11 C 0.06 2.33 5.32 71.98 0.38 2.71 16 12 C -0.08 -2.50 2.51 -10.68 -0.03 -2.52 16 13 C -0.15 -4.29 5.29 30.68 0.16 -4.13 16 14 C 0.07 1.55 6.84 72.01 0.49 2.04 16 15 O -0.40 -9.85 10.76 -148.98 -1.60 -11.45 16 16 C 0.06 1.21 6.84 72.01 0.49 1.70 16 17 C -0.14 -3.29 5.42 30.68 0.17 -3.13 16 18 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 19 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 20 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 21 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 24 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 25 H 0.06 2.16 7.93 -2.38 -0.02 2.14 16 26 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -67.01 259.43 3.08 -63.93 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.08 Total: 2.38 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 2.78 Total: -23.22 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.28 Total: -56.28 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -3.09 Total: -33.35 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.01 3.08 -63.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052154152.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.076 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds