Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48499 * 109.47126 * 240.00337 * 3 2 1 5 5 H 1.48495 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46591 * 120.00537 * 3 2 1 7 7 C 1.38953 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99565 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00115 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00179 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99976 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.47962 * 110.99960 * 169.99757 * 13 12 10 15 15 C 1.53939 * 86.17995 * 222.42316 * 14 13 12 16 16 O 1.42901 * 113.73265 * 269.25725 * 15 14 13 17 17 C 1.47963 * 110.99442 * 70.64116 * 13 12 10 18 18 H 0.96991 * 120.00444 * 359.97438 * 1 2 3 19 19 H 0.97005 * 120.00065 * 0.02562 * 9 7 2 20 20 H 1.08998 * 109.47462 * 59.99832 * 12 10 9 21 21 H 1.09000 * 109.47361 * 299.99329 * 12 10 9 22 22 H 1.08991 * 113.75516 * 108.10700 * 14 13 12 23 23 H 1.09003 * 113.75945 * 336.73836 * 14 13 12 24 24 H 1.09002 * 113.73278 * 138.08129 * 15 14 13 25 25 H 0.96703 * 113.99893 * 178.10150 * 16 15 14 26 26 H 1.09003 * 113.76284 * 23.26689 * 17 13 12 27 27 H 1.09007 * 113.75909 * 251.89873 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9795 -0.0016 14 6 1.5092 -7.2666 0.2377 15 6 2.6857 -7.6054 1.1708 16 8 3.7628 -8.2793 0.5168 17 6 2.8911 -6.0854 1.3016 18 1 -0.4850 0.8399 0.0004 19 1 0.3535 -2.3907 -0.0005 20 1 0.6176 -4.9205 -0.8913 21 1 0.6170 -4.9210 0.8886 22 1 1.4507 -7.9041 -0.6444 23 1 0.5546 -7.1642 0.7541 24 1 2.3837 -8.0889 2.0999 25 1 4.5163 -8.4682 1.0928 26 1 2.3408 -5.6376 2.1291 27 1 3.9368 -5.7792 1.2695 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070840473.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -74.294710 kcal Electronic energy + Delta-G solvation = -12721.584161 eV Core-core repulsion = 10286.609526 eV Total energy + Delta-G solvation = -2434.974635 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23967 -39.59815 -36.48566 -35.88856 -33.32450 -31.09990 -27.33135 -27.05479 -25.04094 -21.19081 -20.88612 -19.94703 -18.31819 -17.79155 -16.87936 -16.67973 -16.53424 -15.67986 -15.41237 -14.96072 -14.21223 -13.74198 -13.70061 -13.47247 -12.98280 -12.90750 -12.46029 -12.42653 -12.13942 -11.64367 -11.52047 -10.87193 -10.36467 -10.04427 -9.61799 -8.48755 -5.98030 1.38198 1.40053 1.51321 2.01899 2.27467 2.77309 3.09796 3.17691 3.45749 3.62708 3.85013 4.23684 4.33149 4.45352 4.52121 4.57385 4.67465 4.81215 5.06368 5.37644 5.44604 5.88315 6.07290 6.57899 6.91893 7.10001 7.52743 8.09041 8.68548 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.087518 B = 0.007166 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.858881 B = 3906.552214 C = 4120.924011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.621 6.621 12 C 0.020 3.980 13 N -0.487 5.487 14 C 0.008 3.992 15 C 0.090 3.910 16 O -0.563 6.563 17 C -0.020 4.020 18 H 0.279 0.721 19 H 0.397 0.603 20 H 0.106 0.894 21 H 0.083 0.917 22 H 0.095 0.905 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.397 0.603 26 H 0.077 0.923 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -11.973 4.518 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.226 3.774 11 O -0.508 6.508 12 C -0.111 4.111 13 N -0.210 5.210 14 C -0.120 4.120 15 C 0.030 3.970 16 O -0.371 6.371 17 C -0.150 4.150 18 H 0.088 0.912 19 H 0.231 0.769 20 H 0.124 0.876 21 H 0.101 0.899 22 H 0.113 0.887 23 H 0.128 0.872 24 H 0.127 0.873 25 H 0.248 0.752 26 H 0.095 0.905 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.419 -11.653 3.399 12.146 hybrid contribution -0.223 1.111 0.982 1.500 sum -0.642 -10.541 4.381 11.433 Atomic orbital electron populations 1.69661 1.06824 1.29459 1.50127 1.26050 0.96570 1.02397 0.96121 0.84978 0.77779 0.76557 0.78948 1.19845 1.19254 1.19600 1.19621 0.92650 0.84083 1.50263 0.90531 1.41935 1.09304 1.04668 1.65122 1.20788 0.88263 0.86041 0.82341 1.90486 1.15900 1.87943 1.56439 1.22403 0.94990 0.89848 1.03901 1.68454 1.19339 1.01081 1.32132 1.24273 0.96548 0.90629 1.00542 1.23195 0.88263 0.89664 0.95877 1.86457 1.30014 1.78341 1.42245 1.24523 1.00865 0.98229 0.91365 0.91191 0.76942 0.87579 0.89930 0.88652 0.87173 0.87318 0.75235 0.90484 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 13.05 21.66 0.28 -49.89 15 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 15 3 Si 0.99 43.49 29.55 68.60 2.03 45.51 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.34 -19.60 9.68 84.04 0.81 -18.79 15 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 15 9 N -0.57 -30.33 5.29 -306.99 -1.62 -31.95 15 10 C 0.44 21.90 7.59 87.66 0.67 22.57 15 11 O -0.62 -36.27 15.13 -3.06 -0.05 -36.31 15 12 C 0.02 0.73 5.31 85.56 0.45 1.18 15 13 N -0.49 -17.17 5.95 -916.27 -5.45 -22.62 15 14 C 0.01 0.20 7.81 86.41 0.67 0.87 15 15 C 0.09 2.05 5.40 31.24 0.17 2.22 15 16 O -0.56 -13.90 13.68 -148.98 -2.04 -15.94 15 17 C -0.02 -0.65 6.59 86.41 0.57 -0.08 15 18 H 0.28 14.20 8.31 -92.72 -0.77 13.43 15 19 H 0.40 19.78 7.90 -92.70 -0.73 19.05 15 20 H 0.11 3.50 8.14 -2.39 -0.02 3.49 15 21 H 0.08 2.50 7.69 -2.39 -0.02 2.48 15 22 H 0.10 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.11 1.98 7.79 -2.39 -0.02 1.96 15 24 H 0.11 1.63 8.14 -2.39 -0.02 1.62 15 25 H 0.40 5.98 9.12 -74.06 -0.68 5.30 15 26 H 0.08 2.29 7.78 -2.39 -0.02 2.27 15 27 H 0.06 2.41 8.09 -2.38 -0.02 2.39 15 Total: -1.00 -73.53 240.11 -3.25 -76.77 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.21 Total: 26.62 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 3.81 Total: 7.81 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -6.79 Total: -104.46 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -2.08 Total: -52.26 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -73.53 -3.25 -76.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070840473.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.480 kcal (2) G-P(sol) polarization free energy of solvation -73.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds