Wall clock time and date at job start Mon Mar 30 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99757 * 2 1 4 4 H 1.48500 * 109.46772 * 269.99727 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99694 * 3 2 1 6 6 H 1.48496 * 109.47103 * 150.00278 * 3 2 1 7 7 C 1.37876 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99972 * 359.72474 * 7 2 1 9 9 C 1.50705 * 119.99900 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46870 * 179.72511 * 9 7 2 11 11 H 1.09002 * 109.87289 * 304.19001 * 10 9 7 12 12 O 1.43739 * 109.87926 * 65.19935 * 10 9 7 13 13 C 1.44383 * 106.97496 * 145.94032 * 12 10 9 14 14 C 1.55002 * 103.48732 * 319.93781 * 13 12 10 15 15 C 1.54097 * 109.87661 * 183.18825 * 10 9 7 16 16 H 1.09001 * 110.49073 * 119.87155 * 15 10 9 17 17 C 1.50698 * 110.48892 * 357.21932 * 15 10 9 18 18 O 1.20821 * 120.00249 * 273.41067 * 17 15 10 19 19 O 1.34226 * 119.99961 * 93.41591 * 17 15 10 20 20 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46936 * 299.72511 * 9 7 2 22 22 H 1.08998 * 109.47394 * 59.72343 * 9 7 2 23 23 H 1.08995 * 110.62120 * 78.43881 * 13 12 10 24 24 H 1.08998 * 110.61665 * 201.28584 * 13 12 10 25 25 H 1.09000 * 110.90413 * 155.22729 * 14 13 12 26 26 H 1.08999 * 110.90762 * 278.79235 * 14 13 12 27 27 H 0.96699 * 117.00225 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0054 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0086 11 1 3.6017 -3.1735 0.8591 12 8 3.6505 -3.2924 -1.2154 13 6 4.7160 -4.2105 -1.5415 14 6 5.9988 -3.4173 -1.1838 15 6 5.5604 -2.6476 0.0898 16 1 5.8913 -3.1708 0.9869 17 6 6.1000 -1.2407 0.0688 18 8 6.3131 -0.6910 -0.9858 19 8 6.3440 -0.5982 1.2218 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6845 -0.8913 22 1 3.8746 -0.6756 0.8886 23 1 4.6425 -5.1143 -0.9368 24 1 4.6982 -4.4577 -2.6029 25 1 6.8251 -4.0931 -0.9634 26 1 6.2657 -2.7277 -1.9846 27 1 6.6893 0.3027 1.1578 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075557432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:25 Heat of formation + Delta-G solvation = -142.270105 kcal Electronic energy + Delta-G solvation = -13359.924536 eV Core-core repulsion = 10889.709516 eV Total energy + Delta-G solvation = -2470.215020 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49716 -38.37174 -35.80024 -33.16478 -32.04198 -30.81109 -27.25320 -23.80631 -22.71870 -21.16865 -19.58187 -17.82693 -17.02867 -16.37514 -15.74554 -15.19781 -14.94240 -14.48655 -13.98305 -12.97448 -12.68778 -12.04126 -12.00038 -11.86728 -11.69301 -11.25263 -10.96763 -10.82706 -10.45909 -10.18207 -10.09662 -9.67876 -9.28487 -8.94228 -8.50951 -6.00522 -3.97589 2.49289 3.26630 3.33259 3.39587 3.41539 4.32920 4.47565 4.64575 5.11308 5.19016 5.33236 5.35688 5.47641 5.58052 5.81336 5.95409 6.16145 6.22958 6.37739 6.75023 6.92861 7.18426 7.53472 7.79532 8.17329 8.56079 9.06106 9.60573 11.12952 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.034846 B = 0.014453 C = 0.011227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.336058 B = 1936.856785 C = 2493.421311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.078 0.922 9 C -0.029 4.029 10 C 0.108 3.892 11 H 0.079 0.921 12 O -0.346 6.346 13 C 0.043 3.957 14 C -0.145 4.145 15 C -0.122 4.122 16 H 0.109 0.891 17 C 0.500 3.500 18 O -0.514 6.514 19 O -0.516 6.516 20 H 0.263 0.737 21 H 0.027 0.973 22 H 0.033 0.967 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.555 -5.241 1.307 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.096 0.904 9 C -0.066 4.066 10 C 0.050 3.950 11 H 0.097 0.903 12 O -0.264 6.264 13 C -0.034 4.034 14 C -0.183 4.183 15 C -0.142 4.142 16 H 0.127 0.873 17 C 0.343 3.657 18 O -0.402 6.402 19 O -0.327 6.327 20 H 0.073 0.927 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 13.097 -5.332 0.929 14.171 hybrid contribution 0.821 1.524 0.097 1.734 sum 13.918 -3.808 1.026 14.466 Atomic orbital electron populations 1.69902 1.06146 1.26763 1.51272 1.24981 0.94748 0.98906 0.94737 0.86826 0.80118 0.84009 0.78612 1.20220 1.21242 1.19402 1.20924 0.88447 0.94784 1.50312 0.90402 1.20047 0.99212 0.90030 0.97313 1.22707 0.86882 0.97445 0.87931 0.90292 1.89133 1.40802 1.55045 1.41469 1.23496 0.85819 0.92903 1.01227 1.23292 0.99100 0.99281 0.96596 1.22712 0.99816 0.90007 1.01650 0.87295 1.22925 0.72891 0.88905 0.81020 1.90677 1.49093 1.67995 1.32443 1.84544 1.78149 1.33533 1.36473 0.92741 0.95495 0.94939 0.92472 0.89054 0.90073 0.88736 0.73589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.56 13.96 55.43 0.77 -27.78 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 15 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 15 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 6 H -0.27 -6.59 6.53 56.52 0.37 -6.22 15 7 C -0.51 -15.02 9.45 -34.44 -0.33 -15.35 15 8 H 0.08 2.49 7.99 -52.49 -0.42 2.07 15 9 C -0.03 -0.72 2.59 -27.88 -0.07 -0.80 15 10 C 0.11 2.22 3.36 -26.16 -0.09 2.14 15 11 H 0.08 1.55 8.14 -51.93 -0.42 1.13 15 12 O -0.35 -7.36 10.96 -35.23 -0.39 -7.74 15 13 C 0.04 0.63 7.72 38.21 0.29 0.93 15 14 C -0.15 -2.03 6.66 -24.54 -0.16 -2.19 15 15 C -0.12 -1.97 3.56 -90.07 -0.32 -2.29 15 16 H 0.11 1.40 8.14 -51.93 -0.42 0.97 15 17 C 0.50 8.83 5.24 36.00 0.19 9.02 15 18 O -0.51 -10.45 15.82 -18.75 -0.30 -10.74 15 19 O -0.52 -7.77 12.96 -39.25 -0.51 -8.28 15 20 H 0.26 7.77 8.31 -40.82 -0.34 7.43 15 21 H 0.03 0.72 6.58 -51.93 -0.34 0.38 15 22 H 0.03 0.80 6.12 -51.93 -0.32 0.48 15 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 26 H 0.09 1.48 6.92 -51.93 -0.36 1.12 15 27 H 0.41 4.45 9.10 45.56 0.41 4.86 15 LS Contribution 231.69 15.07 3.49 3.49 Total: -1.00 -35.11 231.69 -4.48 -39.59 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -2.30 Total: 0.12 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.58 Total: -6.61 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 0.77 Total: -27.78 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.19 Total: -26.77 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -35.11 -4.48 -39.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075557432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.679 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds