Wall clock time and date at job start Mon Mar 30 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99757 * 2 1 4 4 H 1.48500 * 109.46772 * 269.99727 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99694 * 3 2 1 6 6 H 1.48496 * 109.47103 * 150.00278 * 3 2 1 7 7 C 1.37876 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99972 * 359.72474 * 7 2 1 9 9 C 1.50705 * 119.99900 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46870 * 179.72511 * 9 7 2 11 11 H 1.09002 * 109.87289 * 304.19001 * 10 9 7 12 12 O 1.43739 * 109.87926 * 65.19935 * 10 9 7 13 13 C 1.44383 * 106.97496 * 145.94032 * 12 10 9 14 14 C 1.55002 * 103.48732 * 319.93781 * 13 12 10 15 15 C 1.54097 * 109.87661 * 183.18825 * 10 9 7 16 16 H 1.09001 * 110.49073 * 119.87155 * 15 10 9 17 17 C 1.50698 * 110.48892 * 357.21932 * 15 10 9 18 18 O 1.20821 * 120.00249 * 273.41067 * 17 15 10 19 19 O 1.34226 * 119.99961 * 93.41591 * 17 15 10 20 20 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46936 * 299.72511 * 9 7 2 22 22 H 1.08998 * 109.47394 * 59.72343 * 9 7 2 23 23 H 1.08995 * 110.62120 * 78.43881 * 13 12 10 24 24 H 1.08998 * 110.61665 * 201.28584 * 13 12 10 25 25 H 1.09000 * 110.90413 * 155.22729 * 14 13 12 26 26 H 1.08999 * 110.90762 * 278.79235 * 14 13 12 27 27 H 0.96699 * 117.00225 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0054 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0086 11 1 3.6017 -3.1735 0.8591 12 8 3.6505 -3.2924 -1.2154 13 6 4.7160 -4.2105 -1.5415 14 6 5.9988 -3.4173 -1.1838 15 6 5.5604 -2.6476 0.0898 16 1 5.8913 -3.1708 0.9869 17 6 6.1000 -1.2407 0.0688 18 8 6.3131 -0.6910 -0.9858 19 8 6.3440 -0.5982 1.2218 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6845 -0.8913 22 1 3.8746 -0.6756 0.8886 23 1 4.6425 -5.1143 -0.9368 24 1 4.6982 -4.4577 -2.6029 25 1 6.8251 -4.0931 -0.9634 26 1 6.2657 -2.7277 -1.9846 27 1 6.6893 0.3027 1.1578 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075557432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:23 Heat of formation + Delta-G solvation = -169.649527 kcal Electronic energy + Delta-G solvation = -13361.111797 eV Core-core repulsion = 10889.709516 eV Total energy + Delta-G solvation = -2471.402281 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84623 -39.74610 -37.10054 -35.29663 -33.49955 -32.58809 -28.90515 -25.49759 -24.13982 -22.72849 -20.98496 -19.24001 -19.01438 -17.73973 -17.26752 -16.72980 -16.29441 -16.16587 -15.69650 -14.75838 -14.23703 -13.82796 -13.68711 -13.35484 -13.10056 -12.73153 -12.54108 -12.15305 -12.08796 -11.85503 -11.66799 -11.51279 -11.40933 -10.82649 -10.48165 -8.32790 -6.35578 1.14561 1.27277 1.30643 1.39808 2.08222 2.29902 2.95304 3.11161 3.43121 3.75033 4.05657 4.17621 4.34960 4.37187 4.62587 4.67888 4.79644 4.84492 5.03058 5.13457 5.28489 5.53290 5.60530 6.09838 6.27558 6.70885 6.96680 7.26370 8.84307 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.034846 B = 0.014453 C = 0.011227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.336058 B = 1936.856785 C = 2493.421311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.517 4.517 8 H 0.036 0.964 9 C -0.022 4.022 10 C 0.105 3.895 11 H 0.082 0.918 12 O -0.393 6.393 13 C 0.035 3.965 14 C -0.135 4.135 15 C -0.118 4.118 16 H 0.151 0.849 17 C 0.496 3.504 18 O -0.547 6.547 19 O -0.510 6.510 20 H 0.267 0.733 21 H 0.009 0.991 22 H 0.042 0.958 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.073 0.927 27 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.983 -5.399 2.021 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.555 4.555 8 H 0.055 0.945 9 C -0.059 4.059 10 C 0.047 3.953 11 H 0.100 0.900 12 O -0.313 6.313 13 C -0.041 4.041 14 C -0.173 4.173 15 C -0.137 4.137 16 H 0.169 0.831 17 C 0.341 3.659 18 O -0.438 6.438 19 O -0.323 6.323 20 H 0.076 0.924 21 H 0.027 0.973 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.122 0.878 25 H 0.146 0.854 26 H 0.092 0.908 27 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 15.550 -5.499 1.666 16.578 hybrid contribution 0.017 1.493 -0.138 1.500 sum 15.567 -4.005 1.528 16.146 Atomic orbital electron populations 1.70048 1.08030 1.28084 1.52685 1.25944 0.95667 1.03145 0.94370 0.85754 0.79732 0.79013 0.78742 1.20446 1.19902 1.16933 1.21228 0.91197 0.93301 1.49821 0.94536 1.19918 0.95804 0.93616 0.96555 1.22570 0.90131 0.94509 0.88116 0.89977 1.89070 1.43824 1.56676 1.41743 1.23864 0.84562 0.92908 1.02772 1.23295 0.99924 0.99179 0.94884 1.22773 0.96199 0.90060 1.04642 0.83139 1.23264 0.72282 0.89445 0.80957 1.90670 1.50557 1.68848 1.33695 1.84507 1.77707 1.34884 1.35176 0.92402 0.97295 0.94048 0.89515 0.87753 0.85405 0.90782 0.71521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.55 13.96 21.45 0.30 -61.25 15 2 C 0.01 0.34 5.47 84.65 0.46 0.80 15 3 Si 0.94 46.64 27.47 68.60 1.88 48.53 15 4 H -0.28 -13.80 7.11 99.48 0.71 -13.10 15 5 H -0.27 -12.88 7.11 99.48 0.71 -12.17 15 6 H -0.25 -11.09 6.53 99.48 0.65 -10.44 15 7 C -0.52 -31.47 9.45 25.60 0.24 -31.22 15 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 15 9 C -0.02 -1.08 2.59 29.85 0.08 -1.00 15 10 C 0.10 4.18 3.36 30.97 0.10 4.29 15 11 H 0.08 3.16 8.14 -2.39 -0.02 3.14 15 12 O -0.39 -16.63 10.96 -148.98 -1.63 -18.26 15 13 C 0.03 0.95 7.72 72.67 0.56 1.51 15 14 C -0.14 -3.33 6.66 32.01 0.21 -3.11 15 15 C -0.12 -3.41 3.56 -10.44 -0.04 -3.45 15 16 H 0.15 3.10 8.14 -2.39 -0.02 3.08 15 17 C 0.50 16.24 5.24 71.24 0.37 16.61 15 18 O -0.55 -21.34 15.82 21.98 0.35 -20.99 15 19 O -0.51 -13.67 12.96 -51.38 -0.67 -14.34 15 20 H 0.27 16.10 8.31 -92.71 -0.77 15.33 15 21 H 0.01 0.47 6.58 -2.39 -0.02 0.45 15 22 H 0.04 1.96 6.12 -2.39 -0.01 1.95 15 23 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 25 H 0.13 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.07 2.16 6.92 -2.39 -0.02 2.14 15 27 H 0.42 7.90 9.10 -74.06 -0.67 7.23 15 Total: -1.00 -78.29 231.69 2.68 -75.61 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.45 Total: 6.29 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 2.00 Total: -15.59 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.30 Total: -61.25 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -1.95 Total: -53.59 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal Total: -78.29 2.68 -75.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075557432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.043 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds