Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99865 * 2 1 4 4 H 1.48505 * 109.46744 * 269.99909 * 3 2 1 5 5 H 1.48496 * 109.47161 * 30.00062 * 3 2 1 6 6 H 1.48499 * 109.47000 * 150.00314 * 3 2 1 7 7 C 1.37876 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00599 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99633 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47098 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.86767 * 54.00105 * 10 9 7 12 12 O 1.43744 * 110.00668 * 292.91072 * 10 9 7 13 13 C 1.44374 * 106.97492 * 267.01547 * 12 10 9 14 14 C 1.55340 * 103.50460 * 319.90756 * 13 12 10 15 15 C 1.54103 * 109.87897 * 175.00150 * 10 9 7 16 16 H 1.09002 * 110.48828 * 358.87181 * 15 10 9 17 17 C 1.50700 * 110.48868 * 236.35492 * 15 10 9 18 18 O 1.20827 * 120.00190 * 1.84808 * 17 15 10 19 19 O 1.34230 * 120.00079 * 181.83875 * 17 15 10 20 20 H 0.97001 * 120.00479 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46549 * 60.00379 * 9 7 2 22 22 H 1.08993 * 109.47603 * 300.00538 * 9 7 2 23 23 H 1.09002 * 110.61697 * 78.43973 * 13 12 10 24 24 H 1.08997 * 110.62019 * 201.27724 * 13 12 10 25 25 H 1.08997 * 110.96190 * 278.91832 * 14 13 12 26 26 H 1.09006 * 111.00974 * 155.20317 * 14 13 12 27 27 H 0.96697 * 116.99870 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9447 -3.5524 0.8271 12 8 2.9636 -3.6936 -1.2465 13 6 2.2450 -4.5856 -2.1254 14 6 1.8158 -5.7488 -1.1896 15 6 1.4886 -4.9985 0.1244 16 1 0.4159 -4.8234 0.2069 17 6 1.9877 -5.7769 1.3145 18 8 2.8422 -5.3075 2.0282 19 8 1.4827 -6.9915 1.5817 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5572 0.8895 23 1 1.3709 -4.0883 -2.5460 24 1 2.8969 -4.9498 -2.9193 25 1 2.6346 -6.4530 -1.0420 26 1 0.9328 -6.2569 -1.5775 27 1 1.8345 -7.4526 2.3555 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075557435.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = -148.394757 kcal Electronic energy + Delta-G solvation = -13054.409151 eV Core-core repulsion = 10583.928546 eV Total energy + Delta-G solvation = -2470.480605 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.41482 -38.41566 -35.94142 -33.06334 -32.02043 -30.19589 -27.09802 -24.08241 -22.49913 -21.00538 -19.64559 -17.90322 -17.02474 -16.06607 -15.86379 -15.21558 -14.77737 -14.39730 -13.51883 -13.21119 -12.66395 -12.12083 -11.83270 -11.59586 -11.37896 -11.17623 -10.86056 -10.69148 -10.52705 -10.32074 -10.19466 -9.81986 -9.07161 -8.62122 -8.33664 -5.96699 -3.96618 2.39929 3.17624 3.37777 3.42995 3.48788 4.44051 4.56025 4.73603 5.09120 5.32209 5.42222 5.52487 5.60800 5.74691 5.94559 6.05239 6.23794 6.52037 6.62460 6.77271 7.31825 7.64339 7.81803 8.01974 8.05831 8.44189 9.08281 9.66261 11.15214 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.046778 B = 0.009543 C = 0.008913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.429848 B = 2933.393951 C = 3140.837910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.008 3.992 10 C 0.089 3.911 11 H 0.105 0.895 12 O -0.358 6.358 13 C 0.045 3.955 14 C -0.139 4.139 15 C -0.119 4.119 16 H 0.121 0.879 17 C 0.488 3.512 18 O -0.507 6.507 19 O -0.519 6.519 20 H 0.260 0.740 21 H 0.023 0.977 22 H 0.026 0.974 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 -12.592 -1.032 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.078 0.922 9 C -0.029 4.029 10 C 0.031 3.969 11 H 0.123 0.877 12 O -0.277 6.277 13 C -0.032 4.032 14 C -0.177 4.177 15 C -0.139 4.139 16 H 0.139 0.861 17 C 0.331 3.669 18 O -0.394 6.394 19 O -0.331 6.331 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.347 -12.006 -1.218 12.143 hybrid contribution 0.306 0.464 0.613 0.828 sum 1.653 -11.542 -0.604 11.675 Atomic orbital electron populations 1.69953 1.06046 1.26598 1.51495 1.24996 0.94858 0.99288 0.95452 0.86539 0.79873 0.83217 0.78084 1.20681 1.21352 1.19791 1.21126 0.93330 0.90319 1.49607 0.92191 1.19597 0.93671 0.91874 0.97743 1.23195 0.95365 0.90949 0.87367 0.87718 1.88962 1.48456 1.66073 1.24159 1.23526 0.97199 0.88925 0.93522 1.23143 1.02278 0.98600 0.93685 1.22721 1.04105 0.96264 0.90780 0.86073 1.23407 0.78773 0.79034 0.85736 1.90708 1.30623 1.68861 1.49179 1.84562 1.65569 1.31958 1.50982 0.93069 0.95919 0.95604 0.91747 0.89528 0.90725 0.89519 0.73747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 15 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 15 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.27 -6.74 7.11 56.52 0.40 -6.33 15 7 C -0.51 -14.78 8.94 -34.44 -0.31 -15.08 15 8 H 0.06 1.76 7.74 -52.49 -0.41 1.36 15 9 C 0.01 0.21 4.42 -27.88 -0.12 0.09 15 10 C 0.09 1.94 2.99 -26.16 -0.08 1.86 15 11 H 0.11 2.49 6.44 -51.93 -0.33 2.16 15 12 O -0.36 -7.76 11.02 -35.23 -0.39 -8.15 15 13 C 0.05 0.74 7.65 38.40 0.29 1.03 15 14 C -0.14 -1.94 6.72 -24.53 -0.16 -2.10 15 15 C -0.12 -2.03 3.17 -90.24 -0.29 -2.32 15 16 H 0.12 1.97 7.70 -51.93 -0.40 1.57 15 17 C 0.49 7.97 7.51 36.01 0.27 8.24 15 18 O -0.51 -9.95 16.02 -18.75 -0.30 -10.25 15 19 O -0.52 -6.30 13.42 -39.26 -0.53 -6.83 15 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 21 H 0.02 0.61 8.01 -51.93 -0.42 0.19 15 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.06 1.06 8.05 -51.93 -0.42 0.64 15 24 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.07 0.97 7.87 -51.93 -0.41 0.56 15 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.40 3.04 9.10 45.56 0.41 3.46 15 LS Contribution 239.11 15.07 3.60 3.60 Total: -1.00 -33.77 239.11 -4.76 -38.53 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -2.37 Total: -0.92 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.49 Total: -6.79 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -1.22 Total: -25.23 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.77 -4.76 -38.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075557435.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.866 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds