Wall clock time and date at job start Mon Mar 30 2020 02:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99865 * 2 1 4 4 H 1.48505 * 109.46744 * 269.99909 * 3 2 1 5 5 H 1.48496 * 109.47161 * 30.00062 * 3 2 1 6 6 H 1.48499 * 109.47000 * 150.00314 * 3 2 1 7 7 C 1.37876 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00599 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99633 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47098 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.86767 * 54.00105 * 10 9 7 12 12 O 1.43744 * 110.00668 * 292.91072 * 10 9 7 13 13 C 1.44374 * 106.97492 * 267.01547 * 12 10 9 14 14 C 1.55340 * 103.50460 * 319.90756 * 13 12 10 15 15 C 1.54103 * 109.87897 * 175.00150 * 10 9 7 16 16 H 1.09002 * 110.48828 * 358.87181 * 15 10 9 17 17 C 1.50700 * 110.48868 * 236.35492 * 15 10 9 18 18 O 1.20827 * 120.00190 * 1.84808 * 17 15 10 19 19 O 1.34230 * 120.00079 * 181.83875 * 17 15 10 20 20 H 0.97001 * 120.00479 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46549 * 60.00379 * 9 7 2 22 22 H 1.08993 * 109.47603 * 300.00538 * 9 7 2 23 23 H 1.09002 * 110.61697 * 78.43973 * 13 12 10 24 24 H 1.08997 * 110.62019 * 201.27724 * 13 12 10 25 25 H 1.08997 * 110.96190 * 278.91832 * 14 13 12 26 26 H 1.09006 * 111.00974 * 155.20317 * 14 13 12 27 27 H 0.96697 * 116.99870 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9447 -3.5524 0.8271 12 8 2.9636 -3.6936 -1.2465 13 6 2.2450 -4.5856 -2.1254 14 6 1.8158 -5.7488 -1.1896 15 6 1.4886 -4.9985 0.1244 16 1 0.4159 -4.8234 0.2069 17 6 1.9877 -5.7769 1.3145 18 8 2.8422 -5.3075 2.0282 19 8 1.4827 -6.9915 1.5817 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5572 0.8895 23 1 1.3709 -4.0883 -2.5460 24 1 2.8969 -4.9498 -2.9193 25 1 2.6346 -6.4530 -1.0420 26 1 0.9328 -6.2569 -1.5775 27 1 1.8345 -7.4526 2.3555 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075557435.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:29 Heat of formation + Delta-G solvation = -173.636512 kcal Electronic energy + Delta-G solvation = -13055.503716 eV Core-core repulsion = 10583.928546 eV Total energy + Delta-G solvation = -2471.575170 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.74888 -39.85050 -37.13838 -35.23009 -33.46329 -32.01635 -28.77879 -25.96020 -23.91979 -22.50118 -21.17642 -19.18744 -18.63251 -17.93740 -17.25687 -16.69337 -16.56629 -15.97383 -15.11438 -14.54861 -14.36061 -13.89024 -13.42264 -13.15457 -13.08217 -12.60620 -12.55592 -12.41402 -12.21332 -11.88691 -11.79215 -11.54482 -11.13289 -10.58995 -10.33650 -8.21302 -6.29510 1.12859 1.38744 1.40270 1.51922 2.00083 2.41480 3.04640 3.15183 3.42754 3.78353 4.05199 4.23495 4.40151 4.48409 4.72237 4.84824 4.89066 4.91717 5.05296 5.29520 5.52356 5.60183 5.75756 6.09957 6.28643 6.82229 6.96101 7.37684 8.90557 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.046778 B = 0.009543 C = 0.008913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.429848 B = 2933.393951 C = 3140.837910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.015 3.985 10 C 0.094 3.906 11 H 0.079 0.921 12 O -0.389 6.389 13 C 0.033 3.967 14 C -0.122 4.122 15 C -0.120 4.120 16 H 0.128 0.872 17 C 0.500 3.500 18 O -0.547 6.547 19 O -0.499 6.499 20 H 0.265 0.735 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.057 0.943 24 H 0.118 0.882 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 -13.726 -1.584 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.067 0.933 9 C -0.022 4.022 10 C 0.037 3.963 11 H 0.096 0.904 12 O -0.308 6.308 13 C -0.043 4.043 14 C -0.159 4.159 15 C -0.139 4.139 16 H 0.146 0.854 17 C 0.343 3.657 18 O -0.438 6.438 19 O -0.313 6.313 20 H 0.073 0.927 21 H 0.026 0.974 22 H 0.024 0.976 23 H 0.076 0.924 24 H 0.136 0.864 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 1.425 -13.186 -1.769 13.380 hybrid contribution 0.243 0.750 0.768 1.100 sum 1.668 -12.436 -1.002 12.587 Atomic orbital electron populations 1.70052 1.07425 1.27792 1.51894 1.25866 0.95826 1.02987 0.94790 0.85488 0.78585 0.78686 0.78550 1.19661 1.20251 1.19435 1.21479 0.93148 0.92291 1.50139 0.93298 1.19447 0.93958 0.92939 0.95875 1.22750 0.94040 0.92357 0.87191 0.90357 1.88909 1.49399 1.67829 1.24699 1.23875 0.97436 0.88974 0.93990 1.23154 1.04360 0.97606 0.90793 1.22549 1.03603 0.94506 0.93241 0.85376 1.23105 0.77915 0.79809 0.84860 1.90709 1.32586 1.70084 1.50412 1.84481 1.64674 1.29949 1.52170 0.92659 0.97350 0.97617 0.92428 0.86381 0.89150 0.85868 0.70935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.81 15 2 C 0.00 0.17 5.46 84.66 0.46 0.63 15 3 Si 0.96 46.19 29.54 68.60 2.03 48.22 15 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 7 C -0.53 -32.03 8.94 25.60 0.23 -31.80 15 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 15 9 C 0.01 0.81 4.42 29.85 0.13 0.94 15 10 C 0.09 4.22 2.99 30.97 0.09 4.31 15 11 H 0.08 3.89 6.44 -2.39 -0.02 3.87 15 12 O -0.39 -16.94 11.02 -148.98 -1.64 -18.58 15 13 C 0.03 1.02 7.65 72.79 0.56 1.58 15 14 C -0.12 -3.01 6.72 32.02 0.22 -2.79 15 15 C -0.12 -3.93 3.17 -10.55 -0.03 -3.96 15 16 H 0.13 4.01 7.70 -2.39 -0.02 3.99 15 17 C 0.50 15.52 7.51 71.24 0.54 16.06 15 18 O -0.55 -21.40 16.02 21.96 0.35 -21.04 15 19 O -0.50 -10.50 13.42 -51.41 -0.69 -11.19 15 20 H 0.26 15.19 8.31 -92.71 -0.77 14.42 15 21 H 0.01 0.46 8.01 -2.39 -0.02 0.44 15 22 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 23 H 0.06 1.83 8.05 -2.39 -0.02 1.81 15 24 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.09 1.99 7.87 -2.39 -0.02 1.97 15 26 H 0.12 2.20 8.14 -2.38 -0.02 2.18 15 27 H 0.43 4.98 9.10 -74.06 -0.67 4.31 15 Total: -1.00 -74.31 239.11 3.03 -71.28 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 0.50 Total: 3.16 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 2.19 Total: -15.03 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.28 Total: -56.81 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -1.98 Total: -50.82 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -74.31 3.03 -71.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075557435.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.357 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds