Wall clock time and date at job start Mon Mar 30 2020 03:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00268 * 2 1 4 4 H 1.48501 * 109.47165 * 240.00028 * 3 2 1 5 5 H 1.48504 * 109.47262 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47307 * 119.99814 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00271 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47511 * 179.97438 * 10 9 7 12 12 O 1.42896 * 109.47313 * 179.97438 * 11 10 9 13 13 C 1.42905 * 114.00200 * 180.02562 * 12 11 10 14 14 H 1.09008 * 110.75035 * 32.01765 * 13 12 11 15 15 C 1.55300 * 110.85025 * 155.71367 * 13 12 11 16 16 C 1.54940 * 100.94390 * 152.32407 * 15 13 12 17 17 O 1.43649 * 105.13534 * 323.55736 * 16 15 13 18 18 C 1.43236 * 109.97242 * 24.42576 * 17 16 15 19 19 H 0.97007 * 119.99729 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47571 * 59.99668 * 9 7 2 21 21 H 1.09000 * 109.47292 * 299.99470 * 9 7 2 22 22 H 1.09000 * 109.47068 * 59.99450 * 10 9 7 23 23 H 1.09000 * 109.46650 * 299.99953 * 10 9 7 24 24 H 1.09000 * 109.47171 * 59.99798 * 11 10 9 25 25 H 1.09000 * 109.47358 * 299.99805 * 11 10 9 26 26 H 1.09005 * 111.12758 * 270.24758 * 15 13 12 27 27 H 1.09004 * 111.12429 * 34.40563 * 15 13 12 28 28 H 1.09000 * 110.31598 * 204.64378 * 16 15 13 29 29 H 1.08995 * 110.39626 * 82.51020 * 16 15 13 30 30 H 1.09003 * 109.83127 * 238.77718 * 18 17 16 31 31 H 1.09002 * 109.90582 * 117.84658 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4087 -6.0732 0.0006 13 6 1.7941 -7.3634 0.0005 14 1 0.8475 -7.3402 -0.5396 15 6 2.7504 -8.4312 -0.5970 16 6 2.2583 -9.7072 0.1311 17 8 1.9079 -9.2723 1.4546 18 6 1.5914 -7.8754 1.4428 19 1 -0.4850 0.8401 -0.0004 20 1 0.6245 -2.5570 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.8718 -3.6044 0.8905 23 1 2.8717 -3.6044 -0.8895 24 1 0.8531 -5.0451 -0.8886 25 1 0.8538 -5.0446 0.8914 26 1 2.6175 -8.5182 -1.6754 27 1 3.7887 -8.2123 -0.3475 28 1 3.0557 -10.4490 0.1754 29 1 1.3857 -10.1205 -0.3747 30 1 2.2550 -7.3402 2.1219 31 1 0.5548 -7.7272 1.7456 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082453700.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:24 Heat of formation + Delta-G solvation = -111.966408 kcal Electronic energy + Delta-G solvation = -12575.259008 eV Core-core repulsion = 10242.191149 eV Total energy + Delta-G solvation = -2333.067859 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.62985 -37.17579 -33.92206 -31.93886 -30.92040 -28.80698 -26.58548 -23.21306 -22.39722 -21.52849 -20.16011 -17.30445 -16.60814 -16.30840 -15.38090 -15.10306 -14.71366 -14.45040 -13.64212 -13.23323 -12.89887 -12.48447 -12.12853 -11.72164 -11.52065 -11.41638 -10.89164 -10.85354 -10.58693 -10.43233 -9.87564 -9.66185 -9.46568 -9.26618 -9.13789 -8.36715 -6.02101 -4.04569 3.33536 3.37466 3.40212 3.57640 3.97232 4.37737 4.45868 4.77579 4.88639 5.01873 5.19517 5.33937 5.49230 5.56878 5.61024 5.67446 5.76346 5.84464 5.91882 6.13561 6.64024 6.67389 6.81984 7.05594 7.46818 7.63422 7.75668 7.96969 8.39696 9.01740 9.59618 11.09418 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.101046 B = 0.005162 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.034415 B = 5422.505000 C = 5505.857295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.059 3.941 12 O -0.374 6.374 13 C 0.055 3.945 14 H 0.076 0.924 15 C -0.153 4.153 16 C 0.051 3.949 17 O -0.383 6.383 18 C 0.026 3.974 19 H 0.261 0.739 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -15.612 -0.815 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.017 4.017 12 O -0.293 6.293 13 C -0.004 4.004 14 H 0.094 0.906 15 C -0.191 4.191 16 C -0.025 4.025 17 O -0.302 6.302 18 C -0.051 4.051 19 H 0.071 0.929 20 H 0.035 0.965 21 H 0.036 0.964 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.625 -15.581 -0.633 15.814 hybrid contribution 0.054 1.090 -0.203 1.110 sum 2.679 -14.492 -0.836 14.761 Atomic orbital electron populations 1.69954 1.06091 1.26794 1.50742 1.25021 0.94868 0.99316 0.95226 0.86617 0.79550 0.82922 0.78681 1.20200 1.21267 1.20180 1.21178 0.93105 0.90848 1.50802 0.92561 1.19047 0.93898 0.91047 0.97357 1.21665 0.99695 0.91609 1.01595 1.22911 0.92203 0.86903 0.99654 1.87969 1.33955 1.12676 1.94704 1.23586 0.96588 0.85336 0.94868 0.90614 1.23303 1.01246 0.93503 1.01042 1.23327 0.99521 0.96398 0.83247 1.88403 1.89264 1.24041 1.28536 1.23713 1.01122 0.81980 0.98240 0.92900 0.96482 0.96441 0.92501 0.92519 0.93566 0.93614 0.89404 0.89198 0.89462 0.92064 0.90023 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.31 5.52 -26.73 -0.15 -2.45 16 11 C 0.06 1.05 5.81 37.15 0.22 1.27 16 12 O -0.37 -6.24 10.08 -35.23 -0.36 -6.59 16 13 C 0.06 0.73 3.45 -24.79 -0.09 0.64 16 14 H 0.08 0.91 7.89 -51.92 -0.41 0.50 16 15 C -0.15 -1.65 6.89 -24.49 -0.17 -1.82 16 16 C 0.05 0.51 7.78 38.18 0.30 0.81 16 17 O -0.38 -5.07 11.36 -35.23 -0.40 -5.47 16 18 C 0.03 0.34 7.58 37.88 0.29 0.63 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 263.67 15.07 3.97 3.97 Total: -1.00 -30.73 263.67 -6.24 -36.96 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -5.02 Total: -5.23 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -0.15 Total: -14.12 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.76 Total: -12.07 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.73 -6.24 -36.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082453700.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.003 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds