Wall clock time and date at job start Mon Mar 30 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00268 * 2 1 4 4 H 1.48501 * 109.47165 * 240.00028 * 3 2 1 5 5 H 1.48504 * 109.47262 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47307 * 119.99814 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00271 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47511 * 179.97438 * 10 9 7 12 12 O 1.42896 * 109.47313 * 179.97438 * 11 10 9 13 13 C 1.42905 * 114.00200 * 180.02562 * 12 11 10 14 14 H 1.09008 * 110.75035 * 32.01765 * 13 12 11 15 15 C 1.55300 * 110.85025 * 155.71367 * 13 12 11 16 16 C 1.54940 * 100.94390 * 152.32407 * 15 13 12 17 17 O 1.43649 * 105.13534 * 323.55736 * 16 15 13 18 18 C 1.43236 * 109.97242 * 24.42576 * 17 16 15 19 19 H 0.97007 * 119.99729 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47571 * 59.99668 * 9 7 2 21 21 H 1.09000 * 109.47292 * 299.99470 * 9 7 2 22 22 H 1.09000 * 109.47068 * 59.99450 * 10 9 7 23 23 H 1.09000 * 109.46650 * 299.99953 * 10 9 7 24 24 H 1.09000 * 109.47171 * 59.99798 * 11 10 9 25 25 H 1.09000 * 109.47358 * 299.99805 * 11 10 9 26 26 H 1.09005 * 111.12758 * 270.24758 * 15 13 12 27 27 H 1.09004 * 111.12429 * 34.40563 * 15 13 12 28 28 H 1.09000 * 110.31598 * 204.64378 * 16 15 13 29 29 H 1.08995 * 110.39626 * 82.51020 * 16 15 13 30 30 H 1.09003 * 109.83127 * 238.77718 * 18 17 16 31 31 H 1.09002 * 109.90582 * 117.84658 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4087 -6.0732 0.0006 13 6 1.7941 -7.3634 0.0005 14 1 0.8475 -7.3402 -0.5396 15 6 2.7504 -8.4312 -0.5970 16 6 2.2583 -9.7072 0.1311 17 8 1.9079 -9.2723 1.4546 18 6 1.5914 -7.8754 1.4428 19 1 -0.4850 0.8401 -0.0004 20 1 0.6245 -2.5570 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.8718 -3.6044 0.8905 23 1 2.8717 -3.6044 -0.8895 24 1 0.8531 -5.0451 -0.8886 25 1 0.8538 -5.0446 0.8914 26 1 2.6175 -8.5182 -1.6754 27 1 3.7887 -8.2123 -0.3475 28 1 3.0557 -10.4490 0.1754 29 1 1.3857 -10.1205 -0.3747 30 1 2.2550 -7.3402 2.1219 31 1 0.5548 -7.7272 1.7456 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082453700.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:23 Heat of formation + Delta-G solvation = -132.177052 kcal Electronic energy + Delta-G solvation = -12576.135407 eV Core-core repulsion = 10242.191149 eV Total energy + Delta-G solvation = -2333.944258 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.63627 -38.42527 -35.87219 -33.68781 -32.13407 -29.83702 -28.44039 -24.99378 -23.39568 -22.61363 -21.90092 -18.68831 -18.15218 -17.60393 -16.65849 -16.52057 -16.27848 -15.81395 -14.90168 -14.48616 -14.36246 -14.09262 -13.56163 -13.29340 -12.95637 -12.61088 -12.51147 -12.47302 -12.16332 -11.71508 -11.67860 -11.47909 -11.21703 -10.63259 -10.56310 -10.50537 -8.21722 -6.32857 1.40907 1.43904 1.51943 2.37779 2.50440 2.99278 3.11879 3.44371 3.84821 3.94240 4.14199 4.16075 4.24019 4.34161 4.56576 4.63572 4.69925 4.79046 4.87899 4.92435 4.94257 5.07449 5.15480 5.48226 5.68384 5.81514 5.91748 6.15070 6.27644 6.82595 7.36466 8.90096 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.101046 B = 0.005162 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.034415 B = 5422.505000 C = 5505.857295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.097 4.097 11 C 0.070 3.930 12 O -0.388 6.388 13 C 0.045 3.955 14 H 0.090 0.910 15 C -0.149 4.149 16 C 0.049 3.951 17 O -0.402 6.402 18 C 0.027 3.973 19 H 0.265 0.735 20 H -0.002 1.002 21 H -0.003 1.003 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.267 -16.151 -1.280 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.135 4.135 11 C -0.006 4.006 12 O -0.307 6.307 13 C -0.013 4.013 14 H 0.108 0.892 15 C -0.186 4.186 16 C -0.027 4.027 17 O -0.322 6.322 18 C -0.050 4.050 19 H 0.074 0.926 20 H 0.017 0.983 21 H 0.016 0.984 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.311 -16.145 -1.101 16.518 hybrid contribution -0.164 1.177 -0.062 1.190 sum 3.147 -14.968 -1.162 15.340 Atomic orbital electron populations 1.70077 1.07751 1.27968 1.51409 1.25962 0.95796 1.03327 0.94534 0.85484 0.78284 0.77991 0.79196 1.19165 1.20645 1.19238 1.21630 0.93581 0.92303 1.51029 0.92267 1.18927 0.94234 0.92453 0.95383 1.21404 0.98654 0.92129 1.01331 1.22600 0.91703 0.85932 1.00346 1.87920 1.34182 1.13716 1.94889 1.23878 0.97899 0.84050 0.95487 0.89173 1.23333 1.00165 0.92821 1.02286 1.23564 1.01000 0.96276 0.81825 1.88380 1.89472 1.23800 1.30556 1.23654 1.01257 0.82118 0.97948 0.92640 0.98341 0.98447 0.92829 0.92614 0.92709 0.93133 0.87368 0.90020 0.87582 0.90159 0.91421 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.10 -4.17 5.52 30.59 0.17 -4.00 16 11 C 0.07 2.46 5.81 71.98 0.42 2.88 16 12 O -0.39 -12.50 10.08 -148.98 -1.50 -14.00 16 13 C 0.05 1.11 3.45 31.85 0.11 1.22 16 14 H 0.09 1.97 7.89 -2.38 -0.02 1.95 16 15 C -0.15 -2.87 6.89 32.05 0.22 -2.65 16 16 C 0.05 0.85 7.78 72.65 0.56 1.41 16 17 O -0.40 -10.01 11.36 -148.98 -1.69 -11.70 16 18 C 0.03 0.68 7.58 72.45 0.55 1.23 16 19 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 20 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 21 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 22 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -64.96 263.67 3.07 -61.90 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.08 Total: 2.79 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 2.88 Total: -29.04 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.28 Total: -56.27 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -3.19 Total: -25.70 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -64.96 3.07 -61.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082453700.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.281 kcal (2) G-P(sol) polarization free energy of solvation -64.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds