Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86807 * 120.00024 * 2 1 4 4 H 1.48503 * 109.46843 * 269.99931 * 3 2 1 5 5 H 1.48498 * 109.47051 * 29.99632 * 3 2 1 6 6 H 1.48499 * 109.47199 * 150.00106 * 3 2 1 7 7 C 1.38952 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99940 * 0.02562 * 7 2 1 9 9 N 1.37093 * 120.00150 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00165 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00106 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00118 * 179.97438 * 10 9 7 13 13 N 1.46904 * 110.56242 * 32.32539 * 12 10 9 14 14 C 1.54510 * 110.50906 * 154.99966 * 12 10 9 15 15 C 1.54477 * 104.18108 * 118.57849 * 14 12 10 16 16 O 1.44642 * 104.69773 * 336.19290 * 15 14 12 17 17 C 1.44415 * 105.37338 * 40.34325 * 16 15 14 18 18 H 0.96997 * 120.00421 * 359.97438 * 1 2 3 19 19 H 0.97006 * 120.00314 * 0.02562 * 9 7 2 20 20 H 1.00895 * 110.99772 * 302.67869 * 13 12 10 21 21 H 1.00902 * 110.99899 * 66.63138 * 13 12 10 22 22 H 1.09002 * 110.51305 * 237.29380 * 14 12 10 23 23 H 1.08994 * 110.51141 * 359.86709 * 14 12 10 24 24 H 1.09006 * 110.37498 * 94.92285 * 15 14 12 25 25 H 1.09000 * 110.37254 * 217.25804 * 15 14 12 26 26 H 1.08998 * 110.37627 * 200.73568 * 17 16 15 27 27 H 1.09003 * 110.37369 * 78.39849 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5608 -2.3705 -0.0012 13 7 6.0773 -1.2078 0.7334 14 6 6.1026 -3.6818 0.6106 15 6 6.9053 -4.3319 -0.5380 16 8 6.3365 -3.7737 -1.7450 17 6 6.1010 -2.3801 -1.4484 18 1 -0.4850 0.8400 0.0004 19 1 3.8649 -0.3633 -0.0004 20 1 5.7278 -0.3471 0.3398 21 1 5.8552 -1.2728 1.7155 22 1 6.7537 -3.4674 1.4581 23 1 5.2805 -4.3290 0.9160 24 1 7.9604 -4.0692 -0.4597 25 1 6.7809 -5.4146 -0.5224 26 1 5.3603 -1.9663 -2.1326 27 1 7.0320 -1.8165 -1.5096 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082963922.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = -102.764690 kcal Electronic energy + Delta-G solvation = -13294.552832 eV Core-core repulsion = 10858.343646 eV Total energy + Delta-G solvation = -2436.209186 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48578 -39.22390 -36.23457 -35.46056 -33.72963 -31.09985 -29.02225 -27.23122 -24.25828 -22.96965 -21.15886 -20.13187 -18.27804 -17.33937 -17.17171 -16.77419 -16.15140 -15.98250 -15.55911 -15.28759 -14.74140 -14.40893 -13.86131 -13.14852 -13.05455 -12.53035 -12.51228 -12.39736 -12.06494 -11.89620 -11.63128 -11.37208 -10.75092 -10.37627 -9.71276 -8.50413 -6.13933 1.22519 1.29578 1.39048 1.72758 2.15503 2.61265 2.91133 3.06437 3.32065 3.51776 3.88866 4.02109 4.25856 4.40303 4.56646 4.66588 4.81138 4.83774 5.11388 5.39394 5.67095 5.80394 5.92219 6.26377 6.45781 6.74517 7.22751 7.76814 8.66831 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.054396 B = 0.010940 C = 0.010081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.620391 B = 2558.904404 C = 2776.775907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.011 4.011 3 Si 0.962 3.038 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.227 1.227 7 C -0.339 4.339 8 H 0.053 0.947 9 N -0.581 5.581 10 C 0.423 3.577 11 O -0.618 6.618 12 C 0.083 3.917 13 N -0.806 5.806 14 C -0.136 4.136 15 C 0.051 3.949 16 O -0.398 6.398 17 C 0.067 3.933 18 H 0.282 0.718 19 H 0.386 0.614 20 H 0.347 0.653 21 H 0.357 0.643 22 H 0.115 0.885 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.567 2.355 1.253 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.211 4.211 3 Si 0.781 3.219 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.150 1.150 7 C -0.468 4.468 8 H 0.072 0.928 9 N -0.222 5.222 10 C 0.208 3.792 11 O -0.502 6.502 12 C -0.014 4.014 13 N -0.340 5.340 14 C -0.174 4.174 15 C -0.025 4.025 16 O -0.316 6.316 17 C -0.011 4.011 18 H 0.092 0.908 19 H 0.223 0.777 20 H 0.161 0.839 21 H 0.171 0.829 22 H 0.133 0.867 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.622 1.388 0.817 16.700 hybrid contribution -1.637 1.026 0.391 1.971 sum 14.985 2.414 1.208 15.226 Atomic orbital electron populations 1.69793 1.08208 1.29587 1.49118 1.26181 0.96535 1.02830 0.95530 0.85416 0.79694 0.76495 0.80281 1.17871 1.19525 1.15011 1.19019 0.81321 0.95090 1.51348 0.92843 1.42010 1.05938 1.07338 1.66899 1.21791 0.91918 0.83534 0.81911 1.90529 1.71332 1.32926 1.55402 1.22315 0.86694 0.94784 0.97656 1.59067 1.64316 1.02761 1.07835 1.22936 1.00514 0.93540 1.00394 1.23601 0.97581 0.99451 0.81861 1.89131 1.83739 1.22763 1.36015 1.23427 1.01447 0.84273 0.91956 0.90835 0.77720 0.83925 0.82905 0.86660 0.91944 0.88785 0.88304 0.90557 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.96 21.66 0.30 -55.08 15 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 15 3 Si 0.96 37.43 27.74 68.60 1.90 39.33 15 4 H -0.25 -9.40 7.11 99.48 0.71 -8.70 15 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 6 H -0.23 -7.14 6.52 99.48 0.65 -6.49 15 7 C -0.34 -19.90 10.16 84.04 0.85 -19.05 15 8 H 0.05 3.77 7.39 -2.91 -0.02 3.75 15 9 N -0.58 -27.30 5.00 -306.99 -1.54 -28.83 15 10 C 0.42 19.59 6.63 87.66 0.58 20.18 15 11 O -0.62 -35.54 15.21 -3.05 -0.05 -35.59 15 12 C 0.08 2.69 1.23 3.80 0.00 2.69 15 13 N -0.81 -19.67 8.73 -150.49 -1.31 -20.99 15 14 C -0.14 -3.96 6.34 31.61 0.20 -3.76 15 15 C 0.05 1.32 7.65 72.48 0.55 1.88 15 16 O -0.40 -13.38 11.65 -148.98 -1.74 -15.12 15 17 C 0.07 2.03 6.90 72.48 0.50 2.53 15 18 H 0.28 15.29 8.31 -92.71 -0.77 14.52 15 19 H 0.39 14.81 4.09 -92.70 -0.38 14.43 15 20 H 0.35 7.93 7.43 -89.70 -0.67 7.26 15 21 H 0.36 8.17 9.02 -89.69 -0.81 7.36 15 22 H 0.12 2.57 7.97 -2.39 -0.02 2.55 15 23 H 0.06 2.26 6.82 -2.39 -0.02 2.24 15 24 H 0.09 1.79 8.14 -2.38 -0.02 1.77 15 25 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.08 2.52 7.86 -2.39 -0.02 2.50 15 27 H 0.11 2.59 8.06 -2.39 -0.02 2.57 15 Total: -1.00 -75.59 230.65 0.04 -75.55 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -0.70 Total: 36.39 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 3.16 Total: 4.33 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -2.55 Total: -104.90 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -1.78 Total: -50.71 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.90 Total: 39.33 kcal Total: -75.59 0.04 -75.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082963922.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.212 kcal (2) G-P(sol) polarization free energy of solvation -75.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds