Wall clock time and date at job start Mon Mar 30 2020 02:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48502 * 109.47020 * 239.99757 * 3 2 1 5 5 H 1.48494 * 109.47497 * 119.99566 * 3 2 1 6 6 H 1.48500 * 109.46791 * 359.97438 * 3 2 1 7 7 C 1.37880 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99641 * 175.15199 * 7 2 1 9 9 C 1.50694 * 120.00615 * 355.15738 * 7 2 1 10 10 H 1.09004 * 109.53825 * 35.03929 * 9 7 2 11 11 C 1.53178 * 109.54294 * 274.77344 * 9 7 2 12 12 C 1.53097 * 109.16415 * 183.14767 * 11 9 7 13 13 O 1.42906 * 109.41010 * 57.61123 * 12 11 9 14 14 C 1.42901 * 114.09590 * 298.83830 * 13 12 11 15 15 C 1.53089 * 109.41712 * 61.16174 * 14 13 12 16 16 H 1.09003 * 109.52050 * 62.29139 * 15 14 13 17 17 C 1.50697 * 109.57677 * 182.45093 * 15 14 13 18 18 O 1.20829 * 120.00078 * 119.72011 * 17 15 14 19 19 O 1.34227 * 120.00073 * 299.71862 * 17 15 14 20 20 H 0.97001 * 120.00090 * 185.16629 * 1 2 3 21 21 H 1.08995 * 109.52267 * 303.05803 * 11 9 7 22 22 H 1.09006 * 109.52178 * 63.24345 * 11 9 7 23 23 H 1.09003 * 109.47848 * 297.63016 * 12 11 9 24 24 H 1.08993 * 109.48898 * 177.59482 * 12 11 9 25 25 H 1.09002 * 109.48224 * 301.17744 * 14 13 12 26 26 H 1.09001 * 109.47799 * 181.14652 * 14 13 12 27 27 H 0.96700 * 116.99894 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7464 -0.0006 7 6 2.0044 -1.1941 0.0005 8 1 3.0816 -1.1959 -0.0785 9 6 1.2550 -2.4968 0.1113 10 1 0.3035 -2.4158 -0.4143 11 6 1.0015 -2.8183 1.5873 12 6 0.3101 -4.1801 1.6936 13 8 1.1241 -5.1758 1.0706 14 6 1.3555 -4.9528 -0.3218 15 6 2.0888 -3.6221 -0.5090 16 1 3.0603 -3.6692 -0.0170 17 6 2.2815 -3.3543 -1.9795 18 8 1.8018 -2.3654 -2.4814 19 8 2.9860 -4.2143 -2.7316 20 1 -0.4850 -0.8366 0.0756 21 1 1.9510 -2.8491 2.1217 22 1 0.3623 -2.0502 2.0228 23 1 -0.6575 -4.1364 1.1936 24 1 0.1656 -4.4335 2.7438 25 1 0.4016 -4.9194 -0.8481 26 1 1.9642 -5.7630 -0.7234 27 1 3.0828 -3.9998 -3.6695 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233450.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:41 Heat of formation + Delta-G solvation = -151.553499 kcal Electronic energy + Delta-G solvation = -13508.559630 eV Core-core repulsion = 11037.942052 eV Total energy + Delta-G solvation = -2470.617578 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.88358 -38.22904 -35.50416 -34.10328 -31.53401 -30.58285 -25.74714 -24.20846 -22.63463 -21.21589 -19.28620 -17.29092 -17.01639 -16.10069 -15.73232 -14.83423 -14.69898 -13.91571 -13.69118 -13.61222 -12.73930 -12.13499 -11.87058 -11.49337 -11.04125 -10.78163 -10.71392 -10.41972 -10.19939 -10.08867 -9.64199 -9.41664 -9.33504 -8.35644 -8.25023 -6.30328 -3.98605 3.01440 3.45898 3.49078 3.66444 3.67804 4.34211 4.57677 5.32529 5.39078 5.48957 5.71997 5.77574 5.90469 6.04033 6.06039 6.20695 6.40569 6.68731 6.83278 7.07734 7.19108 7.46826 7.61133 8.15218 8.43503 8.66759 8.90502 9.70943 11.09262 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.032608 B = 0.015243 C = 0.011416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.470974 B = 1836.415349 C = 2452.052380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.027 3.973 3 Si 1.065 2.935 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.580 4.580 8 H 0.044 0.956 9 C 0.044 3.956 10 H 0.042 0.958 11 C -0.143 4.143 12 C 0.053 3.947 13 O -0.384 6.384 14 C 0.073 3.927 15 C -0.098 4.098 16 H 0.101 0.899 17 C 0.475 3.525 18 O -0.472 6.472 19 O -0.535 6.535 20 H 0.268 0.732 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -8.134 -0.619 8.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.894 3.106 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.618 4.618 8 H 0.062 0.938 9 C 0.025 3.975 10 H 0.060 0.940 11 C -0.182 4.182 12 C -0.024 4.024 13 O -0.303 6.303 14 C -0.004 4.004 15 C -0.118 4.118 16 H 0.119 0.881 17 C 0.315 3.685 18 O -0.355 6.355 19 O -0.348 6.348 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.570 -6.425 -0.303 6.927 hybrid contribution 0.284 -1.203 -0.747 1.445 sum 2.854 -7.628 -1.050 8.212 Atomic orbital electron populations 1.70787 1.06793 1.30717 1.46307 1.25660 0.96453 1.02334 0.93247 0.83606 0.74999 0.75676 0.76355 1.21636 1.21515 1.20802 1.21631 0.93876 0.91156 1.55098 0.93767 1.18865 0.95985 0.92144 0.90521 0.93969 1.22428 1.00354 0.94586 1.00794 1.22800 0.93067 0.89505 0.96991 1.87847 1.71795 1.48488 1.22193 1.22471 0.98894 0.95970 0.83038 1.21851 1.03261 0.98780 0.87910 0.88124 1.23458 0.74883 0.80263 0.89925 1.90767 1.44985 1.26597 1.73173 1.84579 1.70359 1.53689 1.26124 0.92103 0.92214 0.91222 0.93830 0.89855 0.93501 0.88819 0.74605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.58 13.63 55.43 0.76 -26.83 15 2 C 0.03 0.79 5.45 -17.82 -0.10 0.69 15 3 Si 1.06 25.86 29.91 -169.99 -5.08 20.78 15 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.58 -16.13 6.77 -34.44 -0.23 -16.36 15 8 H 0.04 1.24 7.81 -52.48 -0.41 0.83 15 9 C 0.04 1.06 1.06 -91.59 -0.10 0.97 15 10 H 0.04 1.14 6.55 -51.93 -0.34 0.80 15 11 C -0.14 -3.09 5.40 -26.59 -0.14 -3.24 15 12 C 0.05 0.95 6.84 37.21 0.25 1.21 15 13 O -0.38 -7.10 10.77 -35.23 -0.38 -7.48 15 14 C 0.07 1.30 6.06 37.20 0.23 1.53 15 15 C -0.10 -2.04 2.31 -91.64 -0.21 -2.26 15 16 H 0.10 2.06 8.14 -51.93 -0.42 1.64 15 17 C 0.47 9.89 7.37 36.00 0.27 10.16 15 18 O -0.47 -11.90 15.70 -18.75 -0.29 -12.19 15 19 O -0.53 -8.55 13.36 -39.25 -0.52 -9.07 15 20 H 0.27 8.03 6.66 -40.82 -0.27 7.76 15 21 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 22 H 0.07 1.59 8.14 -51.93 -0.42 1.17 15 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.08 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 26 H 0.09 1.43 8.14 -51.93 -0.42 1.01 15 27 H 0.40 4.55 9.10 45.56 0.41 4.97 15 LS Contribution 233.07 15.07 3.51 3.51 Total: -1.00 -32.69 233.07 -4.41 -37.10 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -2.36 Total: 1.47 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.04 Total: -7.30 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.76 Total: -26.83 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -1.20 Total: -28.74 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.69 -4.41 -37.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233450.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.453 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds