Wall clock time and date at job start Mon Mar 30 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.45769 * 57.39951 * 12 10 9 14 14 C 1.54478 * 110.51051 * 294.64628 * 12 10 9 15 15 O 1.44425 * 104.80605 * 217.37614 * 14 12 10 16 16 C 1.44427 * 105.27294 * 40.51248 * 15 14 12 17 17 C 1.54479 * 104.80111 * 319.49029 * 16 15 14 18 18 H 1.09009 * 110.50836 * 142.62574 * 17 16 15 19 19 N 1.46897 * 110.51172 * 265.32892 * 17 16 15 20 20 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 22 22 H 1.09003 * 110.37512 * 336.20930 * 14 12 10 23 23 H 1.08998 * 110.37254 * 98.54408 * 14 12 10 24 24 H 1.09002 * 110.37338 * 200.66237 * 16 15 14 25 25 H 1.08997 * 110.37264 * 78.32362 * 16 15 14 26 26 H 1.00901 * 111.00665 * 294.65071 * 19 17 16 27 27 H 1.00903 * 110.99868 * 58.60146 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.5765 -4.9180 -0.8579 14 6 0.4512 -5.0297 1.3176 15 8 0.5498 -6.4359 1.6321 16 6 1.9112 -6.8015 1.3176 17 6 2.2264 -6.0553 0.0022 18 1 3.2572 -5.7009 0.0018 19 7 1.9796 -6.9257 -1.1551 20 1 -0.4850 0.8401 0.0004 21 1 0.3534 -2.3906 0.0024 22 1 0.9006 -4.4312 2.1100 23 1 -0.5909 -4.7459 1.1712 24 1 1.9906 -7.8787 1.1712 25 1 2.5845 -6.4748 2.1100 26 1 2.6176 -7.7074 -1.1624 27 1 1.0213 -7.2410 -1.1726 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085373378.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:00 Heat of formation + Delta-G solvation = -86.879964 kcal Electronic energy + Delta-G solvation = -13023.105885 eV Core-core repulsion = 10587.585513 eV Total energy + Delta-G solvation = -2435.520372 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.76728 -37.53294 -34.20666 -33.64835 -31.46681 -30.09382 -27.39944 -25.05253 -22.90981 -21.10129 -19.03644 -18.00531 -16.69783 -16.13007 -15.22319 -15.08560 -14.95880 -14.35823 -13.90057 -13.54812 -12.97593 -12.50813 -11.90990 -11.69246 -11.36626 -11.20536 -10.97323 -10.63807 -10.45920 -10.23966 -9.81582 -9.54713 -8.53052 -8.39415 -8.02706 -6.45777 -3.87210 3.17772 3.24343 3.28607 3.80748 4.07296 4.19190 4.59518 4.81979 4.95115 5.15871 5.29411 5.39880 5.54426 5.65158 5.74654 5.97897 6.14963 6.32043 6.43573 6.86348 7.27971 7.51327 7.57744 8.00463 8.54450 9.12103 9.48118 9.98256 10.71534 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.063792 B = 0.008703 C = 0.008233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.822438 B = 3216.608886 C = 3400.313893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.103 0.897 9 N -0.555 5.555 10 C 0.450 3.550 11 O -0.592 6.592 12 C -0.128 4.128 13 H 0.101 0.899 14 C 0.054 3.946 15 O -0.379 6.379 16 C 0.010 3.990 17 C 0.070 3.930 18 H 0.121 0.879 19 N -0.834 5.834 20 H 0.273 0.727 21 H 0.393 0.607 22 H 0.067 0.933 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.339 0.661 27 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 -9.331 1.263 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.121 0.879 9 N -0.190 5.190 10 C 0.235 3.765 11 O -0.477 6.477 12 C -0.151 4.151 13 H 0.120 0.880 14 C -0.023 4.023 15 O -0.298 6.298 16 C -0.069 4.069 17 C -0.042 4.042 18 H 0.138 0.862 19 N -0.363 5.363 20 H 0.083 0.917 21 H 0.227 0.773 22 H 0.085 0.915 23 H 0.115 0.885 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.152 0.848 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.099 -8.641 0.893 8.688 hybrid contribution -0.331 0.272 0.624 0.757 sum -0.232 -8.369 1.516 8.508 Atomic orbital electron populations 1.69603 1.05971 1.28436 1.49969 1.25285 0.95641 0.99800 0.97015 0.85898 0.78780 0.80310 0.79126 1.20915 1.19846 1.19822 1.19693 0.93413 0.82223 1.48046 0.87871 1.41843 1.09216 1.04528 1.63428 1.19431 0.88013 0.84470 0.84565 1.90484 1.13872 1.86784 1.56591 1.22511 0.97921 0.95012 0.99641 0.88045 1.23480 1.01146 0.82466 0.95206 1.89059 1.28564 1.24877 1.87305 1.24360 0.84575 0.99760 0.98195 1.22813 1.02396 0.91678 0.87353 0.86166 1.58831 1.09051 1.24575 1.43812 0.91685 0.77335 0.91512 0.88457 0.89733 0.91885 0.84817 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 13.05 55.50 0.72 -23.56 15 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 15 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 15 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 15 9 N -0.56 -14.07 5.28 -10.96 -0.06 -14.13 15 10 C 0.45 10.70 6.97 -10.98 -0.08 10.62 15 11 O -0.59 -16.02 14.86 5.55 0.08 -15.94 15 12 C -0.13 -2.36 3.26 -90.20 -0.29 -2.65 15 13 H 0.10 1.79 7.97 -51.93 -0.41 1.37 15 14 C 0.05 0.91 7.17 37.93 0.27 1.18 15 15 O -0.38 -6.12 11.65 -35.23 -0.41 -6.53 15 16 C 0.01 0.15 7.33 37.93 0.28 0.42 15 17 C 0.07 1.14 3.85 -66.15 -0.25 0.89 15 18 H 0.12 2.29 6.50 -51.92 -0.34 1.95 15 19 N -0.83 -11.50 9.19 -3.34 -0.03 -11.53 15 20 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 21 H 0.39 9.52 7.90 -40.82 -0.32 9.20 15 22 H 0.07 1.19 7.86 -51.93 -0.41 0.78 15 23 H 0.10 1.45 8.14 -51.93 -0.42 1.03 15 24 H 0.08 0.99 8.06 -51.93 -0.42 0.57 15 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.34 3.79 9.08 -39.29 -0.36 3.43 15 27 H 0.34 4.21 8.99 -39.29 -0.35 3.85 15 LS Contribution 236.75 15.07 3.57 3.57 Total: -1.00 -30.61 236.75 -4.43 -35.04 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -2.97 Total: 14.77 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.32 Total: 2.41 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.64 Total: -49.22 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.33 Total: -22.46 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.61 -4.43 -35.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085373378.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.837 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds