Wall clock time and date at job start Mon Mar 30 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47194 * 120.00507 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00070 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 H 1.08998 * 110.45769 * 57.39951 * 12 10 9 14 14 C 1.54478 * 110.51051 * 294.64628 * 12 10 9 15 15 O 1.44425 * 104.80605 * 217.37614 * 14 12 10 16 16 C 1.44427 * 105.27294 * 40.51248 * 15 14 12 17 17 C 1.54479 * 104.80111 * 319.49029 * 16 15 14 18 18 H 1.09009 * 110.50836 * 142.62574 * 17 16 15 19 19 N 1.46897 * 110.51172 * 265.32892 * 17 16 15 20 20 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 22 22 H 1.09003 * 110.37512 * 336.20930 * 14 12 10 23 23 H 1.08998 * 110.37254 * 98.54408 * 14 12 10 24 24 H 1.09002 * 110.37338 * 200.66237 * 16 15 14 25 25 H 1.08997 * 110.37264 * 78.32362 * 16 15 14 26 26 H 1.00901 * 111.00665 * 294.65071 * 19 17 16 27 27 H 1.00903 * 110.99868 * 58.60146 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1020 1.6964 1.2124 6 1 3.1018 1.6964 -1.2125 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 1 0.5765 -4.9180 -0.8579 14 6 0.4512 -5.0297 1.3176 15 8 0.5498 -6.4359 1.6321 16 6 1.9112 -6.8015 1.3176 17 6 2.2264 -6.0553 0.0022 18 1 3.2572 -5.7009 0.0018 19 7 1.9796 -6.9257 -1.1551 20 1 -0.4850 0.8401 0.0004 21 1 0.3534 -2.3906 0.0024 22 1 0.9006 -4.4312 2.1100 23 1 -0.5909 -4.7459 1.1712 24 1 1.9906 -7.8787 1.1712 25 1 2.5845 -6.4748 2.1100 26 1 2.6176 -7.7074 -1.1624 27 1 1.0213 -7.2410 -1.1726 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085373378.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:00 Heat of formation + Delta-G solvation = -112.653162 kcal Electronic energy + Delta-G solvation = -13024.223494 eV Core-core repulsion = 10587.585513 eV Total energy + Delta-G solvation = -2436.637982 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.26701 -39.28375 -36.10444 -35.02901 -33.44361 -31.62882 -28.59281 -27.04190 -24.36618 -22.57194 -20.75872 -19.96833 -18.37309 -17.45601 -16.86795 -16.45748 -16.29846 -16.05397 -15.72345 -15.24742 -14.56496 -14.05820 -13.55351 -13.29364 -12.99152 -12.74293 -12.50992 -12.41782 -12.10855 -12.00982 -11.54965 -11.09273 -10.40439 -10.07181 -9.60369 -8.49850 -5.99722 1.38439 1.41774 1.52743 1.95478 2.27578 2.79344 3.12281 3.17975 3.48713 3.63278 3.89773 4.01532 4.13003 4.40076 4.47073 4.65747 4.70205 4.79290 5.05577 5.38290 5.59691 5.94712 6.17238 6.52851 6.62283 7.06670 7.48514 8.02360 8.67026 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.063792 B = 0.008703 C = 0.008233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.822438 B = 3216.608886 C = 3400.313893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.341 4.341 8 H 0.081 0.919 9 N -0.563 5.563 10 C 0.447 3.553 11 O -0.629 6.629 12 C -0.123 4.123 13 H 0.114 0.886 14 C 0.061 3.939 15 O -0.378 6.378 16 C 0.014 3.986 17 C 0.074 3.926 18 H 0.091 0.909 19 N -0.837 5.837 20 H 0.280 0.720 21 H 0.397 0.603 22 H 0.051 0.949 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.060 0.940 26 H 0.356 0.644 27 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 -9.899 1.274 10.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.471 4.471 8 H 0.099 0.901 9 N -0.198 5.198 10 C 0.235 3.765 11 O -0.517 6.517 12 C -0.145 4.145 13 H 0.132 0.868 14 C -0.016 4.016 15 O -0.297 6.297 16 C -0.064 4.064 17 C -0.039 4.039 18 H 0.109 0.891 19 N -0.368 5.368 20 H 0.089 0.911 21 H 0.231 0.769 22 H 0.069 0.931 23 H 0.136 0.864 24 H 0.137 0.863 25 H 0.078 0.922 26 H 0.171 0.829 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.559 -9.238 0.904 9.299 hybrid contribution -0.116 0.389 0.601 0.725 sum -0.675 -8.850 1.504 9.002 Atomic orbital electron populations 1.69661 1.06872 1.29601 1.49536 1.26069 0.96547 1.02467 0.95843 0.84969 0.77790 0.76455 0.79015 1.19369 1.19567 1.19696 1.19689 0.92833 0.83968 1.50563 0.90141 1.41893 1.09327 1.04589 1.63972 1.20344 0.87880 0.85790 0.82520 1.90457 1.15841 1.87699 1.57747 1.22472 0.98226 0.92568 1.01223 0.86844 1.23389 1.01826 0.82888 0.93502 1.89068 1.29349 1.24059 1.87229 1.24443 0.83707 1.01501 0.96789 1.22590 1.00102 0.91699 0.89476 0.89102 1.58715 1.10339 1.25277 1.42488 0.91085 0.76862 0.93094 0.86384 0.86272 0.92193 0.82922 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.05 13.05 21.66 0.28 -48.77 15 2 C -0.01 -0.47 5.50 84.93 0.47 0.00 15 3 Si 0.99 42.55 29.55 68.60 2.03 44.58 15 4 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 7 C -0.34 -19.38 9.68 84.04 0.81 -18.56 15 8 H 0.08 4.85 7.16 -2.92 -0.02 4.83 15 9 N -0.56 -29.00 5.28 -306.98 -1.62 -30.62 15 10 C 0.45 21.62 6.97 87.66 0.61 22.23 15 11 O -0.63 -35.10 14.86 -3.05 -0.05 -35.14 15 12 C -0.12 -4.41 3.26 -10.52 -0.03 -4.44 15 13 H 0.11 3.82 7.97 -2.39 -0.02 3.80 15 14 C 0.06 1.96 7.17 72.48 0.52 2.48 15 15 O -0.38 -11.25 11.65 -148.98 -1.74 -12.99 15 16 C 0.01 0.38 7.33 72.48 0.53 0.91 15 17 C 0.07 2.34 3.85 45.93 0.18 2.52 15 18 H 0.09 3.47 6.50 -2.38 -0.02 3.46 15 19 N -0.84 -21.22 9.19 -164.48 -1.51 -22.74 15 20 H 0.28 14.00 8.31 -92.71 -0.77 13.23 15 21 H 0.40 19.41 7.90 -92.71 -0.73 18.68 15 22 H 0.05 1.79 7.86 -2.39 -0.02 1.77 15 23 H 0.12 3.27 8.14 -2.39 -0.02 3.25 15 24 H 0.12 2.36 8.06 -2.39 -0.02 2.34 15 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 26 H 0.36 7.05 9.08 -89.69 -0.81 6.23 15 27 H 0.35 7.67 8.99 -89.69 -0.81 6.86 15 Total: -1.00 -65.45 236.75 -0.65 -66.10 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -1.13 Total: 34.44 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 3.08 Total: 5.13 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -2.85 Total: -102.12 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.78 Total: -48.13 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.45 -0.65 -66.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085373378.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.554 kcal (2) G-P(sol) polarization free energy of solvation -65.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds