Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00057 * 2 1 4 4 H 1.48496 * 109.47300 * 270.00374 * 3 2 1 5 5 H 1.48505 * 109.47156 * 30.00189 * 3 2 1 6 6 H 1.48504 * 109.47264 * 149.99944 * 3 2 1 7 7 C 1.38948 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00073 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00029 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00275 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00063 * 180.02562 * 10 9 7 13 13 H 1.09004 * 110.56481 * 331.55680 * 12 10 9 14 14 C 1.54488 * 110.51274 * 208.88202 * 12 10 9 15 15 O 1.44417 * 104.80550 * 217.37749 * 14 12 10 16 16 C 1.44425 * 105.27621 * 40.50598 * 15 14 12 17 17 C 1.54473 * 104.80624 * 319.49267 * 16 15 14 18 18 H 1.09006 * 110.51205 * 265.19471 * 17 16 15 19 19 N 1.46906 * 110.51316 * 142.62063 * 17 16 15 20 20 H 0.97001 * 119.99912 * 359.97438 * 1 2 3 21 21 H 0.96997 * 120.00145 * 359.97438 * 9 7 2 22 22 H 1.09000 * 110.37027 * 98.53985 * 14 12 10 23 23 H 1.09007 * 110.46024 * 336.25760 * 14 12 10 24 24 H 1.09002 * 110.37403 * 200.65442 * 16 15 14 25 25 H 1.09003 * 110.46347 * 78.37250 * 16 15 14 26 26 H 1.00892 * 111.00091 * 54.11616 * 19 17 16 27 27 H 1.00902 * 110.99536 * 178.06986 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0021 11 8 3.4474 -3.4210 -0.0021 12 6 5.5608 -2.3704 -0.0021 13 1 5.9436 -1.4726 -0.4874 14 6 6.1021 -3.6368 -0.7021 15 8 7.2706 -4.0090 0.0606 16 6 6.9066 -3.7976 1.4421 17 6 6.1022 -2.4788 1.4409 18 1 6.7523 -1.6347 1.6715 19 7 4.9939 -2.5509 2.4025 20 1 -0.4850 0.8401 0.0004 21 1 3.8649 -0.3633 -0.0014 22 1 6.3772 -3.4123 -1.7327 23 1 5.3601 -4.4347 -0.6734 24 1 7.7997 -3.6968 2.0587 25 1 6.2878 -4.6191 1.8032 26 1 5.3275 -2.8039 3.3204 27 1 4.4824 -1.6816 2.4305 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085373382.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -102.839587 kcal Electronic energy + Delta-G solvation = -13224.384920 eV Core-core repulsion = 10788.172487 eV Total energy + Delta-G solvation = -2436.212433 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24060 -39.18549 -35.95547 -35.29508 -33.65751 -31.55246 -28.66288 -27.15554 -24.08169 -22.59440 -21.01449 -19.83108 -18.22763 -17.34973 -17.02875 -16.74252 -16.26469 -15.83830 -15.23366 -15.08199 -14.79840 -14.44348 -14.13486 -13.19421 -12.95928 -12.66675 -12.40988 -12.31484 -11.99522 -11.89926 -11.46352 -10.85622 -10.39176 -10.20129 -9.59521 -8.37257 -5.97178 1.29581 1.36283 1.44406 1.99872 2.24502 2.74988 3.07060 3.16065 3.49813 3.62881 3.81625 4.06190 4.27228 4.34878 4.40157 4.75632 4.78925 4.84062 4.91218 5.57473 5.66012 6.00253 6.18524 6.54056 6.62934 6.93616 7.44271 8.02821 8.80768 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.054744 B = 0.010288 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.350845 B = 2720.947677 C = 2824.341967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.231 1.231 7 C -0.319 4.319 8 H 0.054 0.946 9 N -0.591 5.591 10 C 0.488 3.512 11 O -0.611 6.611 12 C -0.137 4.137 13 H 0.122 0.878 14 C 0.064 3.936 15 O -0.380 6.380 16 C 0.051 3.949 17 C 0.074 3.926 18 H 0.087 0.913 19 N -0.852 5.852 20 H 0.277 0.723 21 H 0.386 0.614 22 H 0.114 0.886 23 H 0.051 0.949 24 H 0.125 0.875 25 H 0.055 0.945 26 H 0.355 0.645 27 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.413 2.231 3.116 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.155 1.155 7 C -0.448 4.448 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.276 3.724 11 O -0.495 6.495 12 C -0.159 4.159 13 H 0.140 0.860 14 C -0.013 4.013 15 O -0.298 6.298 16 C -0.026 4.026 17 C -0.039 4.039 18 H 0.105 0.895 19 N -0.387 5.387 20 H 0.087 0.913 21 H 0.221 0.779 22 H 0.132 0.868 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.074 0.926 26 H 0.170 0.830 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 15.748 0.957 2.571 15.985 hybrid contribution -0.214 1.636 0.532 1.734 sum 15.534 2.593 3.102 16.051 Atomic orbital electron populations 1.69809 1.08133 1.29028 1.50908 1.26051 0.96382 1.02495 0.96439 0.85386 0.79443 0.77028 0.79737 1.18528 1.20245 1.15461 1.18963 0.81456 0.94725 1.49700 0.92798 1.42000 1.05661 1.07205 1.68290 1.19996 0.89376 0.83208 0.79830 1.90516 1.71008 1.32931 1.55001 1.22801 0.91898 1.02279 0.98967 0.86018 1.23287 0.87211 0.94250 0.96552 1.89055 1.34996 1.88016 1.17781 1.23594 0.99698 0.95349 0.83941 1.22726 0.91654 0.99230 0.90259 0.89543 1.58553 1.26681 1.40784 1.12643 0.91322 0.77898 0.86790 0.93082 0.85715 0.92617 0.82982 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.42 13.96 21.66 0.30 -56.12 15 2 C -0.02 -0.86 5.50 84.93 0.47 -0.39 15 3 Si 0.96 38.34 27.73 68.60 1.90 40.24 15 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 15 6 H -0.23 -7.61 6.52 99.48 0.65 -6.96 15 7 C -0.32 -18.48 10.16 84.04 0.85 -17.63 15 8 H 0.05 3.76 7.39 -2.91 -0.02 3.73 15 9 N -0.59 -27.30 5.04 -306.98 -1.55 -28.84 15 10 C 0.49 21.89 5.25 87.66 0.46 22.35 15 11 O -0.61 -34.00 15.30 -3.08 -0.05 -34.05 15 12 C -0.14 -4.35 3.51 -10.52 -0.04 -4.38 15 13 H 0.12 3.04 8.14 -2.39 -0.02 3.02 15 14 C 0.06 2.02 7.13 72.49 0.52 2.54 15 15 O -0.38 -11.02 11.65 -148.98 -1.74 -12.75 15 16 C 0.05 1.27 7.29 72.48 0.53 1.80 15 17 C 0.07 1.93 4.24 45.93 0.19 2.12 15 18 H 0.09 1.70 8.14 -2.38 -0.02 1.68 15 19 N -0.85 -25.50 8.04 -164.47 -1.32 -26.82 15 20 H 0.28 15.29 8.31 -92.71 -0.77 14.52 15 21 H 0.39 14.84 5.76 -92.71 -0.53 14.31 15 22 H 0.11 2.98 8.14 -2.39 -0.02 2.96 15 23 H 0.05 1.96 6.90 -2.38 -0.02 1.94 15 24 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.06 1.58 8.06 -2.39 -0.02 1.56 15 26 H 0.36 8.19 9.00 -89.70 -0.81 7.38 15 27 H 0.35 10.98 8.51 -89.69 -0.76 10.22 15 Total: -1.00 -74.59 232.03 -0.41 -75.00 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.95 Total: 36.95 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 2.98 Total: 6.40 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -2.57 Total: -111.78 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.78 Total: -46.80 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Total: -74.59 -0.41 -75.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085373382.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.844 kcal (2) G-P(sol) polarization free energy of solvation -74.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds