Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31475 * 1 3 3 Si 1.86803 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47351 * 270.00164 * 3 2 1 5 5 H 1.48508 * 109.47044 * 30.00003 * 3 2 1 6 6 H 1.48500 * 109.47218 * 149.99787 * 3 2 1 7 7 C 1.38878 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99659 * 359.97438 * 7 2 1 9 9 N 1.37186 * 120.00312 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00497 * 180.02562 * 9 7 2 11 11 O 1.21589 * 119.99623 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00220 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99714 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.56472 * 32.32451 * 13 12 10 15 15 C 1.54510 * 110.50813 * 154.99592 * 13 12 10 16 16 C 1.54477 * 104.18108 * 118.57713 * 15 13 12 17 17 O 1.44642 * 104.69773 * 336.19290 * 16 15 13 18 18 C 1.44415 * 105.37338 * 40.34325 * 17 16 15 19 19 H 0.97000 * 120.00247 * 0.02562 * 1 2 3 20 20 H 0.97001 * 119.99761 * 359.97438 * 9 7 2 21 21 H 0.96994 * 120.00162 * 359.97438 * 12 10 9 22 22 H 1.09002 * 110.51305 * 237.29243 * 15 13 12 23 23 H 1.08994 * 110.51141 * 359.86573 * 15 13 12 24 24 H 1.09006 * 110.37498 * 94.92285 * 16 15 13 25 25 H 1.09000 * 110.37254 * 217.25804 * 16 15 13 26 26 H 1.08998 * 110.37627 * 200.73568 * 18 17 16 27 27 H 1.09003 * 110.37369 * 78.39849 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 2.4962 2.0466 -1.4000 5 1 1.4460 2.6527 0.7001 6 1 3.5462 1.4403 0.7001 7 6 2.0092 -1.2027 -0.0005 8 1 1.4692 -2.1380 -0.0005 9 7 3.3811 -1.2026 0.0000 10 6 4.0551 -2.3698 -0.0011 11 8 3.4472 -3.4228 -0.0020 12 7 5.4028 -2.3697 0.0000 13 6 6.1354 -3.6384 -0.0006 14 1 5.5804 -4.4007 -0.5474 15 6 7.5424 -3.4508 -0.6110 16 6 8.5059 -3.8229 0.5376 17 8 7.7372 -3.6115 1.7445 18 6 6.4128 -4.1039 1.4460 19 1 -0.4850 0.8400 -0.0004 20 1 3.8661 -0.3625 0.0004 21 1 5.8878 -1.5296 0.0011 22 1 7.6829 -4.1204 -1.4595 23 1 7.6920 -2.4148 -0.9145 24 1 8.8061 -4.8678 0.4578 25 1 9.3814 -3.1737 0.5238 26 1 5.6836 -3.6706 2.1305 27 1 6.3902 -5.1921 1.5053 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087312159.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = -69.091926 kcal Electronic energy + Delta-G solvation = -12852.088876 eV Core-core repulsion = 10417.339851 eV Total energy + Delta-G solvation = -2434.749025 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.72221 -38.26175 -34.35146 -33.59022 -31.63747 -30.53789 -28.32309 -24.66140 -22.82070 -21.02153 -19.87741 -18.63618 -17.13345 -16.38074 -15.87083 -15.36077 -14.84288 -14.19040 -14.03851 -13.29336 -12.91830 -12.77799 -12.18967 -11.66870 -11.59794 -11.49026 -11.16131 -10.98437 -10.56265 -9.91120 -9.89992 -9.57040 -8.99545 -8.43698 -8.10317 -6.19314 -3.72666 3.09357 3.12777 3.20369 3.66772 3.98464 4.18144 4.19449 4.62149 4.89512 5.00342 5.20246 5.37086 5.41354 5.48698 5.60701 5.66942 5.82436 5.99744 6.09703 6.79056 7.16246 7.34053 7.89688 8.36912 8.84935 9.03435 9.54651 9.96543 10.94453 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.061315 B = 0.008365 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.549479 B = 3346.469134 C = 3571.580020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.038 3.962 3 Si 0.880 3.120 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.292 4.292 8 H 0.119 0.881 9 N -0.612 5.612 10 C 0.665 3.335 11 O -0.611 6.611 12 N -0.753 5.753 13 C 0.140 3.860 14 H 0.102 0.898 15 C -0.163 4.163 16 C 0.044 3.956 17 O -0.378 6.378 18 C 0.032 3.968 19 H 0.271 0.729 20 H 0.369 0.631 21 H 0.387 0.613 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.239 -2.865 -0.652 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.164 4.164 3 Si 0.707 3.293 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.421 4.421 8 H 0.137 0.863 9 N -0.255 5.255 10 C 0.366 3.634 11 O -0.492 6.492 12 N -0.410 5.410 13 C 0.033 3.967 14 H 0.120 0.880 15 C -0.202 4.202 16 C -0.033 4.033 17 O -0.297 6.297 18 C -0.047 4.047 19 H 0.082 0.918 20 H 0.202 0.798 21 H 0.220 0.780 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.500 -3.584 -0.456 15.915 hybrid contribution 0.709 1.699 -0.202 1.852 sum 16.208 -1.885 -0.658 16.331 Atomic orbital electron populations 1.69632 1.05401 1.27141 1.51139 1.24910 0.95452 0.97655 0.98335 0.86671 0.79653 0.84346 0.78624 1.19874 1.20348 1.19772 1.19272 0.78173 0.96610 1.47999 0.86332 1.41359 1.07299 1.04455 1.72362 1.15734 0.80590 0.85107 0.81985 1.90777 1.67356 1.30534 1.60577 1.45085 1.05281 1.07459 1.83206 1.21903 0.91538 0.87769 0.95528 0.88005 1.23269 0.94404 1.03434 0.99069 1.23430 0.95049 1.00624 0.84180 1.89158 1.22576 1.83707 1.34281 1.24021 0.84514 0.98660 0.97467 0.91833 0.79829 0.77953 0.89659 0.90045 0.92269 0.89241 0.88354 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.49 0.77 -25.88 15 2 C 0.04 1.06 5.50 -17.47 -0.10 0.97 15 3 Si 0.88 19.94 27.74 -169.99 -4.71 15.23 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -5.67 6.52 56.52 0.37 -5.30 15 7 C -0.29 -8.43 10.16 -14.92 -0.15 -8.58 15 8 H 0.12 3.90 7.39 -52.48 -0.39 3.51 15 9 N -0.61 -14.99 5.10 -15.34 -0.08 -15.06 15 10 C 0.66 15.55 8.52 -86.92 -0.74 14.81 15 11 O -0.61 -16.72 15.57 5.29 0.08 -16.64 15 12 N -0.75 -13.16 5.09 -57.14 -0.29 -13.45 15 13 C 0.14 2.08 3.48 -66.36 -0.23 1.85 15 14 H 0.10 1.65 7.56 -51.93 -0.39 1.26 15 15 C -0.16 -1.74 6.84 -25.16 -0.17 -1.91 15 16 C 0.04 0.45 7.65 37.93 0.29 0.74 15 17 O -0.38 -5.36 11.65 -35.23 -0.41 -5.77 15 18 C 0.03 0.46 7.36 37.93 0.28 0.74 15 19 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 20 H 0.37 7.98 5.78 -40.82 -0.24 7.75 15 21 H 0.39 5.77 8.39 -40.82 -0.34 5.42 15 22 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.08 0.82 7.70 -51.93 -0.40 0.42 15 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.10 1.64 8.06 -51.93 -0.42 1.23 15 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 235.09 15.07 3.54 3.54 Total: -1.00 -33.41 235.09 -4.95 -38.36 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -3.04 Total: 11.05 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.82 Total: 8.62 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.41 Total: -54.39 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.33 Total: -22.41 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.23 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -33.41 -4.95 -38.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087312159.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.728 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds