Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31475 * 1 3 3 Si 1.86803 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47351 * 270.00164 * 3 2 1 5 5 H 1.48508 * 109.47044 * 30.00003 * 3 2 1 6 6 H 1.48500 * 109.47218 * 149.99787 * 3 2 1 7 7 C 1.38878 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99659 * 359.97438 * 7 2 1 9 9 N 1.37186 * 120.00312 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00497 * 180.02562 * 9 7 2 11 11 O 1.21589 * 119.99623 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00220 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99714 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.56472 * 32.32451 * 13 12 10 15 15 C 1.54510 * 110.50813 * 154.99592 * 13 12 10 16 16 C 1.54477 * 104.18108 * 118.57713 * 15 13 12 17 17 O 1.44642 * 104.69773 * 336.19290 * 16 15 13 18 18 C 1.44415 * 105.37338 * 40.34325 * 17 16 15 19 19 H 0.97000 * 120.00247 * 0.02562 * 1 2 3 20 20 H 0.97001 * 119.99761 * 359.97438 * 9 7 2 21 21 H 0.96994 * 120.00162 * 359.97438 * 12 10 9 22 22 H 1.09002 * 110.51305 * 237.29243 * 15 13 12 23 23 H 1.08994 * 110.51141 * 359.86573 * 15 13 12 24 24 H 1.09006 * 110.37498 * 94.92285 * 16 15 13 25 25 H 1.09000 * 110.37254 * 217.25804 * 16 15 13 26 26 H 1.08998 * 110.37627 * 200.73568 * 18 17 16 27 27 H 1.09003 * 110.37369 * 78.39849 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 2.4962 2.0466 -1.4000 5 1 1.4460 2.6527 0.7001 6 1 3.5462 1.4403 0.7001 7 6 2.0092 -1.2027 -0.0005 8 1 1.4692 -2.1380 -0.0005 9 7 3.3811 -1.2026 0.0000 10 6 4.0551 -2.3698 -0.0011 11 8 3.4472 -3.4228 -0.0020 12 7 5.4028 -2.3697 0.0000 13 6 6.1354 -3.6384 -0.0006 14 1 5.5804 -4.4007 -0.5474 15 6 7.5424 -3.4508 -0.6110 16 6 8.5059 -3.8229 0.5376 17 8 7.7372 -3.6115 1.7445 18 6 6.4128 -4.1039 1.4460 19 1 -0.4850 0.8400 -0.0004 20 1 3.8661 -0.3625 0.0004 21 1 5.8878 -1.5296 0.0011 22 1 7.6829 -4.1204 -1.4595 23 1 7.6920 -2.4148 -0.9145 24 1 8.8061 -4.8678 0.4578 25 1 9.3814 -3.1737 0.5238 26 1 5.6836 -3.6706 2.1305 27 1 6.3902 -5.1921 1.5053 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087312159.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = -96.790769 kcal Electronic energy + Delta-G solvation = -12853.289988 eV Core-core repulsion = 10417.339851 eV Total energy + Delta-G solvation = -2435.950137 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14597 -39.77057 -36.19176 -35.29814 -33.70713 -31.69657 -29.51595 -26.67482 -23.88033 -22.24786 -21.62664 -20.63629 -18.86299 -17.63830 -17.04220 -16.83802 -16.33541 -15.82218 -15.63538 -14.90373 -14.81848 -14.17903 -13.83662 -13.04787 -12.87065 -12.67609 -12.48185 -12.40371 -11.99445 -11.91174 -11.55788 -10.99529 -10.90549 -10.30321 -9.85373 -8.35056 -5.96209 1.31038 1.37634 1.44690 2.10501 2.26402 2.26742 3.04134 3.22421 3.59355 3.75586 3.91297 4.17587 4.23557 4.37952 4.66483 4.77009 4.87975 5.00669 5.06107 5.43664 5.66167 5.84706 5.88027 6.31706 6.84942 6.94805 7.56892 8.05534 8.82875 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.061315 B = 0.008365 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.549479 B = 3346.469134 C = 3571.580020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.018 4.018 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.312 4.312 8 H 0.058 0.942 9 N -0.612 5.612 10 C 0.666 3.334 11 O -0.658 6.658 12 N -0.731 5.731 13 C 0.128 3.872 14 H 0.085 0.915 15 C -0.150 4.150 16 C 0.041 3.959 17 O -0.396 6.396 18 C 0.036 3.964 19 H 0.277 0.723 20 H 0.387 0.613 21 H 0.405 0.595 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.467 -1.288 -1.061 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.215 4.215 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.442 4.442 8 H 0.076 0.924 9 N -0.257 5.257 10 C 0.367 3.633 11 O -0.542 6.542 12 N -0.389 5.389 13 C 0.021 3.979 14 H 0.103 0.897 15 C -0.188 4.188 16 C -0.035 4.035 17 O -0.315 6.315 18 C -0.043 4.043 19 H 0.087 0.913 20 H 0.222 0.778 21 H 0.241 0.759 22 H 0.126 0.874 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.132 0.868 26 H 0.088 0.912 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.808 -2.015 -0.867 18.936 hybrid contribution -0.293 1.075 -0.075 1.116 sum 18.516 -0.940 -0.942 18.563 Atomic orbital electron populations 1.69816 1.07863 1.28935 1.51762 1.25952 0.96442 1.02359 0.96776 0.85343 0.79181 0.77069 0.79715 1.18220 1.20133 1.16157 1.18845 0.80223 0.95027 1.50071 0.92433 1.41039 1.05781 1.05645 1.73243 1.16018 0.82302 0.84071 0.80912 1.90745 1.69046 1.32198 1.62211 1.44899 1.03041 1.09575 1.81363 1.22186 0.93434 0.86042 0.96193 0.89733 1.23254 0.90925 1.04935 0.99722 1.23714 0.95015 1.02523 0.82247 1.89142 1.22206 1.83899 1.36296 1.23848 0.84696 0.99326 0.96390 0.91332 0.77759 0.75887 0.87354 0.88773 0.90426 0.86832 0.91223 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.96 21.65 0.30 -57.54 15 2 C -0.02 -1.01 5.50 84.90 0.47 -0.54 15 3 Si 0.97 40.03 27.74 68.60 1.90 41.93 15 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 15 5 H -0.28 -11.36 7.11 99.48 0.71 -10.65 15 6 H -0.24 -8.47 6.52 99.48 0.65 -7.82 15 7 C -0.31 -18.69 10.16 84.01 0.85 -17.84 15 8 H 0.06 4.07 7.39 -2.91 -0.02 4.05 15 9 N -0.61 -29.91 5.10 -320.71 -1.63 -31.54 15 10 C 0.67 31.44 8.52 179.06 1.53 32.96 15 11 O -0.66 -37.43 15.57 -4.00 -0.06 -37.49 15 12 N -0.73 -24.51 5.09 -452.95 -2.30 -26.82 15 13 C 0.13 3.60 3.48 46.01 0.16 3.76 15 14 H 0.08 2.71 7.56 -2.39 -0.02 2.69 15 15 C -0.15 -2.64 6.84 31.61 0.22 -2.42 15 16 C 0.04 0.68 7.65 72.48 0.55 1.24 15 17 O -0.40 -10.26 11.65 -148.98 -1.74 -11.99 15 18 C 0.04 1.01 7.36 72.48 0.53 1.54 15 19 H 0.28 15.58 8.31 -92.71 -0.77 14.81 15 20 H 0.39 15.83 5.78 -92.71 -0.54 15.30 15 21 H 0.41 10.86 8.39 -92.71 -0.78 10.09 15 22 H 0.11 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.09 1.46 7.70 -2.39 -0.02 1.44 15 24 H 0.08 1.03 8.14 -2.38 -0.02 1.02 15 25 H 0.11 1.39 8.14 -2.39 -0.02 1.37 15 26 H 0.07 2.36 8.06 -2.39 -0.02 2.34 15 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 Total: -1.00 -76.68 235.09 0.60 -76.08 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.18 Total: 28.67 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 4.31 Total: 18.70 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -3.64 Total: -115.89 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -1.80 Total: -49.48 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.90 Total: 41.93 kcal Total: -76.68 0.60 -76.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087312159.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.715 kcal (2) G-P(sol) polarization free energy of solvation -76.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds