Wall clock time and date at job start Mon Mar 30 2020 03:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 C 1.52999 * 109.47307 * 119.99981 * 2 1 3 5 5 C 1.53000 * 109.47362 * 239.99917 * 2 1 3 6 6 C 1.50697 * 109.62782 * 60.00042 * 5 2 1 7 7 H 1.08003 * 120.00045 * 275.45416 * 6 5 2 8 8 C 1.37882 * 120.00206 * 95.45379 * 6 5 2 9 9 N 1.31511 * 119.99817 * 354.01878 * 8 6 5 10 10 Si 1.86802 * 119.99802 * 174.01962 * 8 6 5 11 11 H 1.48494 * 109.47360 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46642 * 120.00322 * 10 8 6 13 13 H 1.48497 * 109.47100 * 239.99686 * 10 8 6 14 14 O 1.43753 * 109.63363 * 299.60726 * 5 2 1 15 15 C 1.44579 * 104.92104 * 215.70723 * 14 5 2 16 16 C 1.54921 * 101.63664 * 36.27159 * 15 14 5 17 17 O 1.43371 * 109.63448 * 180.39041 * 5 2 1 18 18 H 1.09002 * 109.46882 * 60.00548 * 1 2 3 19 19 H 1.09005 * 109.47123 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47382 * 299.99986 * 1 2 3 21 21 H 1.08994 * 109.47716 * 60.00099 * 3 2 1 22 22 H 1.09001 * 109.47125 * 179.97438 * 3 2 1 23 23 H 1.09008 * 109.47262 * 299.99559 * 3 2 1 24 24 H 1.09003 * 109.47176 * 59.99783 * 4 2 1 25 25 H 1.09001 * 109.47335 * 180.02562 * 4 2 1 26 26 H 1.09003 * 109.47151 * 300.00279 * 4 2 1 27 27 H 0.97000 * 119.99879 * 179.97438 * 9 8 6 28 28 H 1.08997 * 111.09328 * 278.15842 * 15 14 5 29 29 H 1.08999 * 110.97799 * 154.32739 * 15 14 5 30 30 H 1.09000 * 110.69314 * 205.96403 * 16 15 14 31 31 H 1.08997 * 110.84657 * 82.82048 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7213 -1.2492 6 6 1.5397 -0.0136 -2.4820 7 1 0.5582 -0.2383 -2.8727 8 6 2.3349 0.9206 -3.1113 9 7 3.4790 1.2805 -2.5719 10 14 1.7871 1.6750 -4.7300 11 1 0.4722 1.1065 -5.1213 12 1 1.6628 3.1465 -4.5732 13 1 2.7906 1.3724 -5.7819 14 8 1.5704 -2.0799 -1.2481 15 6 2.6509 -2.8477 -1.8254 16 6 3.8926 -2.1109 -1.2640 17 8 3.4737 -0.7312 -1.2481 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.6767 1.9564 0.8899 22 1 3.1299 1.4425 0.0005 23 1 1.6766 1.9563 -0.8901 24 1 1.6767 -1.7489 1.2493 25 1 3.1300 -0.7208 1.2495 26 1 1.6766 -0.2074 2.1392 27 1 4.0387 1.9374 -3.0148 28 1 2.6280 -2.8000 -2.9141 29 1 2.6221 -3.8816 -1.4815 30 1 4.7507 -2.2453 -1.9226 31 1 4.1248 -2.4547 -0.2560 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107264221.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:04 Heat of formation + Delta-G solvation = -88.240630 kcal Electronic energy + Delta-G solvation = -14480.787959 eV Core-core repulsion = 12148.748927 eV Total energy + Delta-G solvation = -2332.039032 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.16352 -35.12299 -33.34697 -32.22893 -28.54910 -26.60443 -25.90914 -25.41983 -22.12005 -21.86476 -18.03304 -16.71470 -15.69811 -14.92411 -14.80589 -13.85777 -13.43968 -12.97694 -12.75055 -12.44974 -12.03696 -11.35608 -11.23327 -11.09717 -11.01086 -10.84191 -10.57081 -10.51603 -10.23691 -10.09220 -9.94327 -9.53445 -9.37600 -8.77713 -8.39577 -7.73219 -5.89140 -4.06911 3.29272 3.38279 3.42741 4.42457 4.88932 5.28163 5.50511 5.73795 5.90843 6.08971 6.12214 6.20120 6.22415 6.42852 6.51736 6.63663 6.75199 6.76455 6.87232 6.93344 7.17894 7.23300 7.34485 7.53117 7.62345 7.90183 7.94376 8.26355 8.53504 9.16849 9.62985 11.08332 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.018111 C = 0.015362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.168355 B = 1545.655107 C = 1822.198354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C -0.106 4.106 4 C -0.137 4.137 5 C 0.377 3.623 6 C -0.555 4.555 7 H 0.066 0.934 8 C 0.085 3.915 9 N -0.835 5.835 10 Si 0.880 3.120 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 O -0.396 6.396 15 C 0.030 3.970 16 C 0.013 3.987 17 O -0.318 6.318 18 H 0.062 0.938 19 H 0.044 0.956 20 H 0.032 0.968 21 H 0.014 0.986 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.256 0.744 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -3.616 3.156 4.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.058 4.058 3 C -0.164 4.164 4 C -0.194 4.194 5 C 0.303 3.697 6 C -0.593 4.593 7 H 0.084 0.916 8 C -0.122 4.122 9 N -0.470 5.470 10 Si 0.707 3.293 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 O -0.318 6.318 15 C -0.048 4.048 16 C -0.065 4.065 17 O -0.238 6.238 18 H 0.081 0.919 19 H 0.063 0.937 20 H 0.051 0.949 21 H 0.033 0.967 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.484 -3.360 3.229 4.685 hybrid contribution -0.110 0.255 -1.044 1.080 sum -0.595 -3.105 2.186 3.843 Atomic orbital electron populations 1.21649 0.95589 1.00500 1.00311 1.20777 0.94778 0.96492 0.93713 1.21500 1.01771 0.94062 0.99017 1.21854 1.00694 0.99627 0.97268 1.21017 0.77256 0.78878 0.92578 1.21365 1.02788 1.23414 1.11743 0.91585 1.24938 0.94755 0.95797 0.96685 1.70177 1.10738 1.29240 1.36827 0.86748 0.78871 0.79047 0.84609 1.19746 1.20967 1.21011 1.89003 1.39321 1.21294 1.82151 1.23883 0.86889 0.95365 0.98646 1.23881 0.97528 0.86496 0.98619 1.89309 1.21112 1.18508 1.94844 0.91915 0.93692 0.94930 0.96651 0.91910 0.91504 0.93579 0.93192 0.94497 0.93417 0.91989 0.90589 0.91095 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 8.09 37.16 0.30 -2.33 16 2 C -0.06 -1.31 0.47 -154.51 -0.07 -1.38 16 3 C -0.11 -2.50 7.07 37.16 0.26 -2.24 16 4 C -0.14 -2.81 8.18 37.16 0.30 -2.51 16 5 C 0.38 9.55 0.27 -27.88 -0.01 9.54 16 6 C -0.56 -15.20 6.61 -34.44 -0.23 -15.43 16 7 H 0.07 1.86 7.75 -52.48 -0.41 1.45 16 8 C 0.09 2.31 4.37 -17.82 -0.08 2.24 16 9 N -0.84 -23.20 9.89 55.43 0.55 -22.65 16 10 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 O -0.40 -9.55 9.65 -59.05 -0.57 -10.12 16 15 C 0.03 0.61 7.90 38.17 0.30 0.91 16 16 C 0.01 0.27 8.07 38.17 0.31 0.58 16 17 O -0.32 -8.22 7.12 -59.05 -0.42 -8.64 16 18 H 0.06 1.40 7.18 -51.93 -0.37 1.03 16 19 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 22 H 0.06 1.59 7.35 -51.93 -0.38 1.21 16 23 H 0.07 1.71 6.31 -51.92 -0.33 1.38 16 24 H 0.05 0.92 7.68 -51.93 -0.40 0.52 16 25 H 0.05 1.04 7.68 -51.93 -0.40 0.64 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 245.49 15.07 3.70 3.70 Total: -1.00 -29.03 245.49 -5.45 -34.48 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.78 Total: -2.09 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 1.09 Total: -10.62 kcal Atomic # 7 Polarization: -23.20 SS G_CDS: 0.55 Total: -22.65 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.99 Total: -18.76 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.03 -5.45 -34.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107264221.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.759 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds