Wall clock time and date at job start Mon Mar 30 2020 03:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47247 * 2 1 4 4 H 1.08998 * 109.22104 * 304.40716 * 3 2 1 5 5 C 1.52587 * 109.22404 * 63.76102 * 3 2 1 6 6 C 1.53095 * 109.95766 * 190.99806 * 5 3 2 7 7 S 1.81757 * 108.83831 * 296.97653 * 6 5 3 8 8 C 1.81750 * 102.22107 * 53.26477 * 7 6 5 9 9 H 1.08992 * 109.68259 * 186.86137 * 8 7 6 10 10 C 1.50702 * 109.57279 * 66.53952 * 8 7 6 11 11 H 1.07998 * 120.00180 * 245.76486 * 10 8 7 12 12 C 1.37878 * 119.99996 * 65.77449 * 10 8 7 13 13 N 1.31515 * 120.00021 * 6.37967 * 12 10 8 14 14 Si 1.86801 * 120.00087 * 186.38144 * 12 10 8 15 15 H 1.48494 * 109.47206 * 94.94265 * 14 12 10 16 16 H 1.48502 * 109.47154 * 214.94643 * 14 12 10 17 17 H 1.48503 * 109.46889 * 334.94359 * 14 12 10 18 18 C 1.52579 * 109.22682 * 184.99833 * 3 2 1 19 19 H 1.08997 * 109.47286 * 299.99843 * 1 2 3 20 20 H 1.09000 * 109.47584 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47164 * 60.00141 * 1 2 3 22 22 H 1.08997 * 109.46862 * 119.99802 * 2 1 3 23 23 H 1.08997 * 109.47286 * 240.00157 * 2 1 3 24 24 H 1.09002 * 109.39361 * 311.14656 * 5 3 2 25 25 H 1.09008 * 109.39029 * 70.84738 * 5 3 2 26 26 H 1.08996 * 109.58097 * 177.17021 * 6 5 3 27 27 H 1.09002 * 109.68093 * 56.84515 * 6 5 3 28 28 H 0.96997 * 119.99863 * 180.02562 * 13 12 10 29 29 H 1.09001 * 109.38883 * 289.14962 * 18 3 2 30 30 H 1.08991 * 109.39002 * 48.85599 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6113 1.9747 -0.8491 5 6 1.6069 2.1285 1.2923 6 6 1.8650 3.6345 1.1963 7 16 3.6521 3.9136 1.0176 8 6 4.0666 2.8562 -0.4014 9 1 5.1472 2.8376 -0.5420 10 6 3.4049 3.3957 -1.6433 11 1 2.6337 2.8227 -2.1366 12 6 3.7842 4.6207 -2.1498 13 7 4.8065 5.2609 -1.6258 14 14 2.8461 5.3709 -3.5803 15 1 1.8126 6.3020 -3.0606 16 1 3.7882 6.1150 -4.4543 17 1 2.1916 4.2921 -4.3633 18 6 3.5606 1.4378 -0.1255 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 0.5437 1.9533 1.4564 25 1 2.1731 1.7169 2.1279 26 1 1.5076 4.1248 2.1018 27 1 1.3433 4.0419 0.3303 28 1 5.0731 6.1229 -1.9819 29 1 3.9992 1.0713 0.8026 30 1 3.8540 0.7830 -0.9460 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929811.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:04 Heat of formation + Delta-G solvation = -47.681723 kcal Electronic energy + Delta-G solvation = -11517.983167 eV Core-core repulsion = 9630.455772 eV Total energy + Delta-G solvation = -1887.527394 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.86577 -35.18833 -32.80771 -32.07436 -28.26673 -25.90495 -23.86244 -22.35114 -20.85762 -18.58450 -17.19136 -16.58362 -15.65267 -15.36745 -14.89205 -14.51051 -14.37062 -13.79470 -13.57176 -13.23539 -12.97536 -12.85602 -12.46326 -12.33895 -12.05860 -11.89762 -11.56587 -11.32667 -11.18856 -10.88308 -10.43420 -10.02726 -8.34527 -7.81470 -6.25245 1.36646 1.41051 1.50797 1.61951 2.37277 2.39750 3.34756 3.90447 4.03058 4.12700 4.42574 4.46843 4.65377 4.70697 4.74773 4.84789 4.95829 5.00511 5.11853 5.19430 5.24552 5.35805 5.38157 5.44656 5.56768 5.64995 5.76482 6.12872 6.74549 7.37536 8.89679 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.034823 B = 0.013966 C = 0.011859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.867302 B = 2004.403047 C = 2360.552902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.086 4.086 4 H 0.060 0.940 5 C -0.100 4.100 6 C -0.052 4.052 7 S -0.401 6.401 8 C 0.111 3.889 9 H 0.025 0.975 10 C -0.518 4.518 11 H 0.067 0.933 12 C 0.028 3.972 13 N -0.883 5.883 14 Si 0.952 3.048 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.262 1.262 18 C -0.094 4.094 19 H 0.062 0.938 20 H 0.066 0.934 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.262 0.738 29 H 0.053 0.947 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 -7.882 2.868 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.105 4.105 4 H 0.078 0.922 5 C -0.139 4.139 6 C -0.201 4.201 7 S -0.172 6.172 8 C -0.014 4.014 9 H 0.043 0.957 10 C -0.560 4.560 11 H 0.085 0.915 12 C -0.178 4.178 13 N -0.519 5.519 14 Si 0.777 3.223 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.186 1.186 18 C -0.133 4.133 19 H 0.081 0.919 20 H 0.085 0.915 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.508 -7.066 3.535 10.899 hybrid contribution -0.574 0.256 -1.501 1.627 sum -8.081 -6.811 2.034 10.762 Atomic orbital electron populations 1.21815 0.94918 1.02038 1.01880 1.21521 0.96638 0.94887 1.01887 1.21049 0.94618 0.96825 0.98008 0.92191 1.21715 1.02087 0.92294 0.97793 1.23068 0.93414 1.00260 1.03320 1.86536 1.12073 1.71320 1.47313 1.20582 0.96935 0.91848 0.92031 0.95710 1.21436 1.20913 1.03961 1.09679 0.91513 1.25756 0.95269 0.97647 0.99143 1.70129 1.25640 1.14729 1.41434 0.85633 0.78620 0.78747 0.79257 1.20452 1.20926 1.18601 1.21646 0.96420 0.95232 1.00012 0.91912 0.91529 0.93503 0.91470 0.92382 0.89200 0.91609 0.88651 0.92320 0.92876 0.92856 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.66 71.98 0.70 -2.63 16 2 C -0.11 -2.98 5.37 30.59 0.16 -2.81 16 3 C -0.09 -2.99 1.81 -11.07 -0.02 -3.01 16 4 H 0.06 2.38 6.02 -2.39 -0.01 2.36 16 5 C -0.10 -3.24 4.98 30.49 0.15 -3.09 16 6 C -0.05 -2.06 6.24 72.01 0.45 -1.61 16 7 S -0.40 -19.99 21.05 -56.49 -1.19 -21.17 16 8 C 0.11 5.65 2.66 29.88 0.08 5.73 16 9 H 0.02 1.45 8.11 -2.39 -0.02 1.43 16 10 C -0.52 -27.68 7.54 25.60 0.19 -27.48 16 11 H 0.07 3.45 6.37 -2.91 -0.02 3.43 16 12 C 0.03 1.51 5.26 84.65 0.45 1.95 16 13 N -0.88 -51.92 12.80 21.45 0.27 -51.64 16 14 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 18 C -0.09 -3.79 4.59 30.49 0.14 -3.65 16 19 H 0.06 1.30 6.29 -2.39 -0.02 1.28 16 20 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 1.55 8.09 -2.39 -0.02 1.53 16 24 H 0.09 2.37 6.02 -2.39 -0.01 2.36 16 25 H 0.07 2.09 8.06 -2.38 -0.02 2.07 16 26 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.05 2.05 8.06 -2.39 -0.02 2.03 16 30 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 Total: -1.00 -60.80 246.93 4.51 -56.29 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.09 Total: 8.01 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 2.30 Total: -36.59 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.27 Total: -51.64 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -19.99 SS G_CDS: -1.19 Total: -21.17 kcal Total: -60.80 4.51 -56.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929811.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.611 kcal (2) G-P(sol) polarization free energy of solvation -60.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds