Wall clock time and date at job start Mon Mar 30 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09004 * 109.22493 * 304.99636 * 3 2 1 5 5 C 1.52577 * 109.22751 * 64.40153 * 3 2 1 6 6 C 1.53121 * 109.94420 * 191.03489 * 5 3 2 7 7 S 1.81746 * 108.80890 * 296.91562 * 6 5 3 8 8 C 1.81743 * 102.22235 * 53.28740 * 7 6 5 9 9 H 1.09001 * 109.68638 * 66.60384 * 8 7 6 10 10 C 1.50704 * 109.57465 * 186.92917 * 8 7 6 11 11 H 1.08001 * 120.00159 * 119.35988 * 10 8 7 12 12 C 1.37874 * 119.99680 * 299.34941 * 10 8 7 13 13 N 1.31525 * 119.99612 * 180.02562 * 12 10 8 14 14 Si 1.86797 * 120.00346 * 0.02562 * 12 10 8 15 15 H 1.48507 * 109.47029 * 89.99381 * 14 12 10 16 16 H 1.48498 * 109.47133 * 209.99458 * 14 12 10 17 17 H 1.48505 * 109.46971 * 329.99866 * 14 12 10 18 18 C 1.52582 * 109.22553 * 185.59901 * 3 2 1 19 19 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 20 20 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 1.09002 * 109.39309 * 311.14398 * 5 3 2 25 25 H 1.09001 * 109.38757 * 70.85096 * 5 3 2 26 26 H 1.08996 * 109.57333 * 177.12334 * 6 5 3 27 27 H 1.08999 * 109.60603 * 56.72187 * 6 5 3 28 28 H 0.97002 * 119.99554 * 180.02562 * 13 12 10 29 29 H 1.09007 * 109.38881 * 289.15286 * 18 3 2 30 30 H 1.09000 * 109.39171 * 48.95023 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6031 1.9777 -0.8432 5 6 1.6206 2.1237 1.2993 6 6 1.8769 3.6304 1.2054 7 16 3.6621 3.9100 1.0100 8 6 4.0625 2.8576 -0.4166 9 1 3.5769 3.2499 -1.3101 10 6 5.5552 2.8329 -0.6226 11 1 6.0932 1.8983 -0.5631 12 6 6.2339 4.0035 -0.8874 13 7 7.5366 3.9819 -1.0677 14 14 5.3035 5.6200 -0.9899 15 1 5.2501 6.2466 0.3554 16 1 5.9984 6.5320 -1.9336 17 1 3.9223 5.3663 -1.4729 18 6 3.5593 1.4383 -0.1406 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.5591 1.9479 1.4738 25 1 2.1956 1.7090 2.1272 26 1 1.5284 4.1175 2.1160 27 1 1.3470 4.0387 0.3448 28 1 8.0141 4.8055 -1.2536 29 1 4.0070 1.0685 0.7820 30 1 3.8444 0.7876 -0.9673 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929817.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:14 Heat of formation + Delta-G solvation = -34.646705 kcal Electronic energy + Delta-G solvation = -11350.890675 eV Core-core repulsion = 9463.928521 eV Total energy + Delta-G solvation = -1886.962154 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.51316 -33.43919 -31.70692 -30.79536 -27.18767 -24.14798 -22.54727 -20.54150 -19.70679 -17.03331 -15.78086 -14.71772 -14.32930 -14.05844 -13.79973 -13.07884 -12.91856 -12.58551 -12.35253 -11.97344 -11.59208 -11.22895 -10.98907 -10.98408 -10.53718 -10.28575 -9.95329 -9.81918 -9.74436 -9.28897 -8.87629 -8.38791 -6.53292 -6.29954 -4.27960 2.80203 3.36671 3.55072 3.58908 3.88675 4.42572 5.00338 5.10516 5.24058 5.26871 5.42729 5.58179 5.73940 5.85966 5.91133 6.00688 6.06143 6.17997 6.23037 6.35266 6.41903 6.46601 6.59273 6.71397 6.86655 7.15433 7.41891 8.24381 8.70900 9.28552 10.77043 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.051236 B = 0.012106 C = 0.010662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.364737 B = 2312.304324 C = 2625.543030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.097 4.097 4 H 0.063 0.937 5 C -0.108 4.108 6 C -0.089 4.089 7 S -0.371 6.371 8 C 0.086 3.914 9 H 0.044 0.956 10 C -0.479 4.479 11 H 0.085 0.915 12 C 0.084 3.916 13 N -0.871 5.871 14 Si 0.881 3.119 15 H -0.259 1.259 16 H -0.293 1.293 17 H -0.258 1.258 18 C -0.096 4.096 19 H 0.051 0.949 20 H 0.048 0.952 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.271 0.729 29 H 0.065 0.935 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 -4.168 1.835 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.115 4.115 4 H 0.082 0.918 5 C -0.147 4.147 6 C -0.237 4.237 7 S -0.141 6.141 8 C -0.038 4.038 9 H 0.062 0.938 10 C -0.523 4.523 11 H 0.103 0.897 12 C -0.126 4.126 13 N -0.506 5.506 14 Si 0.709 3.291 15 H -0.184 1.184 16 H -0.221 1.221 17 H -0.183 1.183 18 C -0.135 4.135 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.328 -3.389 2.455 12.076 hybrid contribution -1.104 0.260 -0.624 1.294 sum -12.431 -3.128 1.831 12.949 Atomic orbital electron populations 1.21846 0.96522 1.00935 1.01707 1.21556 0.95180 0.96830 1.01880 1.21215 0.97341 0.95362 0.97600 0.91844 1.21723 1.00454 0.94135 0.98351 1.23214 0.98673 0.98466 1.03344 1.87801 1.07019 1.67316 1.51976 1.21343 0.99618 0.92410 0.90449 0.93837 1.20880 0.89030 0.96356 1.46016 0.89663 1.25168 0.94848 0.99959 0.92605 1.69909 1.07583 1.28940 1.44196 0.86453 0.80434 0.82781 0.79416 1.18411 1.22073 1.18275 1.21675 0.92410 0.97509 1.01914 0.93005 0.93271 0.92616 0.92036 0.92131 0.92148 0.91305 0.90039 0.91655 0.91931 0.91633 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 37.16 0.36 -1.36 16 2 C -0.12 -1.55 5.37 -26.73 -0.14 -1.70 16 3 C -0.10 -1.57 1.93 -91.05 -0.18 -1.74 16 4 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 5 C -0.11 -1.70 4.99 -26.89 -0.13 -1.83 16 6 C -0.09 -1.60 6.46 37.22 0.24 -1.36 16 7 S -0.37 -8.72 18.01 -107.50 -1.94 -10.65 16 8 C 0.09 2.04 1.99 -27.83 -0.06 1.99 16 9 H 0.04 1.07 7.19 -51.93 -0.37 0.70 16 10 C -0.48 -13.35 9.15 -34.44 -0.31 -13.67 16 11 H 0.09 2.51 7.99 -52.49 -0.42 2.10 16 12 C 0.08 2.41 5.44 -17.82 -0.10 2.31 16 13 N -0.87 -26.11 13.96 55.43 0.77 -25.34 16 14 Si 0.88 22.58 24.81 -169.99 -4.22 18.36 16 15 H -0.26 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 18 C -0.10 -1.90 4.28 -26.89 -0.11 -2.01 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.61 6.31 -51.93 -0.33 0.28 16 22 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.80 6.05 -51.93 -0.31 0.49 16 25 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.06 1.34 8.06 -51.92 -0.42 0.92 16 30 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 LS Contribution 243.67 15.07 3.67 3.67 Total: -1.00 -29.27 243.67 -6.95 -36.22 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.81 Total: -2.88 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.44 Total: -19.38 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.77 Total: -25.34 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.22 Total: 18.36 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.94 Total: -10.65 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.27 -6.95 -36.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929817.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.571 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds