Wall clock time and date at job start Mon Mar 30 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09004 * 109.22493 * 304.99636 * 3 2 1 5 5 C 1.52577 * 109.22751 * 64.40153 * 3 2 1 6 6 C 1.53121 * 109.94420 * 191.03489 * 5 3 2 7 7 S 1.81746 * 108.80890 * 296.91562 * 6 5 3 8 8 C 1.81743 * 102.22235 * 53.28740 * 7 6 5 9 9 H 1.09001 * 109.68638 * 66.60384 * 8 7 6 10 10 C 1.50704 * 109.57465 * 186.92917 * 8 7 6 11 11 H 1.08001 * 120.00159 * 119.35988 * 10 8 7 12 12 C 1.37874 * 119.99680 * 299.34941 * 10 8 7 13 13 N 1.31525 * 119.99612 * 180.02562 * 12 10 8 14 14 Si 1.86797 * 120.00346 * 0.02562 * 12 10 8 15 15 H 1.48507 * 109.47029 * 89.99381 * 14 12 10 16 16 H 1.48498 * 109.47133 * 209.99458 * 14 12 10 17 17 H 1.48505 * 109.46971 * 329.99866 * 14 12 10 18 18 C 1.52582 * 109.22553 * 185.59901 * 3 2 1 19 19 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 20 20 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 1.09002 * 109.39309 * 311.14398 * 5 3 2 25 25 H 1.09001 * 109.38757 * 70.85096 * 5 3 2 26 26 H 1.08996 * 109.57333 * 177.12334 * 6 5 3 27 27 H 1.08999 * 109.60603 * 56.72187 * 6 5 3 28 28 H 0.97002 * 119.99554 * 180.02562 * 13 12 10 29 29 H 1.09007 * 109.38881 * 289.15286 * 18 3 2 30 30 H 1.09000 * 109.39171 * 48.95023 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6031 1.9777 -0.8432 5 6 1.6206 2.1237 1.2993 6 6 1.8769 3.6304 1.2054 7 16 3.6621 3.9100 1.0100 8 6 4.0625 2.8576 -0.4166 9 1 3.5769 3.2499 -1.3101 10 6 5.5552 2.8329 -0.6226 11 1 6.0932 1.8983 -0.5631 12 6 6.2339 4.0035 -0.8874 13 7 7.5366 3.9819 -1.0677 14 14 5.3035 5.6200 -0.9899 15 1 5.2501 6.2466 0.3554 16 1 5.9984 6.5320 -1.9336 17 1 3.9223 5.3663 -1.4729 18 6 3.5593 1.4383 -0.1406 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.5591 1.9479 1.4738 25 1 2.1956 1.7090 2.1272 26 1 1.5284 4.1175 2.1160 27 1 1.3470 4.0387 0.3448 28 1 8.0141 4.8055 -1.2536 29 1 4.0070 1.0685 0.7820 30 1 3.8444 0.7876 -0.9673 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929817.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:14 Heat of formation + Delta-G solvation = -51.997747 kcal Electronic energy + Delta-G solvation = -11351.643073 eV Core-core repulsion = 9463.928521 eV Total energy + Delta-G solvation = -1887.714551 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.87014 -35.43248 -33.11250 -32.41654 -28.77198 -25.79695 -23.78565 -22.29011 -21.05591 -19.08295 -17.53477 -16.52669 -15.63723 -15.46948 -15.28429 -14.96529 -14.52688 -14.15034 -13.86980 -13.21651 -13.06163 -12.82051 -12.81086 -12.22427 -11.95825 -11.82038 -11.76279 -11.41916 -11.38740 -11.07893 -10.77743 -10.23256 -8.51318 -8.38593 -6.50360 1.02270 1.32534 1.48146 1.57658 2.06883 2.33536 3.07774 3.75440 3.90417 3.99759 4.27905 4.36095 4.48581 4.55785 4.67126 4.72397 4.80815 4.84663 4.98138 5.15169 5.19974 5.21103 5.26473 5.31981 5.41172 5.54258 5.58887 6.07132 6.49291 7.10384 8.63398 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.051236 B = 0.012106 C = 0.010662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.364737 B = 2312.304324 C = 2625.543030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.092 4.092 4 H 0.064 0.936 5 C -0.104 4.104 6 C -0.071 4.071 7 S -0.419 6.419 8 C 0.092 3.908 9 H 0.039 0.961 10 C -0.497 4.497 11 H 0.051 0.949 12 C 0.036 3.964 13 N -0.919 5.919 14 Si 0.936 3.064 15 H -0.266 1.266 16 H -0.286 1.286 17 H -0.248 1.248 18 C -0.092 4.092 19 H 0.053 0.947 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.273 0.727 29 H 0.053 0.947 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 -4.276 2.424 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.110 4.110 4 H 0.082 0.918 5 C -0.143 4.143 6 C -0.219 4.219 7 S -0.190 6.190 8 C -0.033 4.033 9 H 0.057 0.943 10 C -0.539 4.539 11 H 0.070 0.930 12 C -0.168 4.168 13 N -0.557 5.557 14 Si 0.762 3.238 15 H -0.191 1.191 16 H -0.214 1.214 17 H -0.172 1.172 18 C -0.131 4.131 19 H 0.072 0.928 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.669 -3.517 3.027 15.385 hybrid contribution -0.176 0.221 -0.732 0.785 sum -14.845 -3.296 2.294 15.378 Atomic orbital electron populations 1.21814 0.94375 1.02203 1.02196 1.21507 0.96937 0.94494 1.02099 1.21169 0.94076 0.97726 0.98069 0.91801 1.21729 1.02765 0.92121 0.97665 1.23382 0.92778 1.00620 1.05089 1.87704 1.13359 1.66956 1.51028 1.21166 0.97124 0.94807 0.90182 0.94292 1.21051 0.91216 0.95034 1.46640 0.93033 1.25867 0.95417 1.02888 0.92633 1.70004 1.08973 1.29767 1.46930 0.85611 0.79808 0.79423 0.78993 1.19126 1.21382 1.17178 1.21620 0.95506 0.94726 1.01218 0.92783 0.91763 0.91775 0.92101 0.91846 0.88182 0.91824 0.87540 0.90448 0.91759 0.92828 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.67 71.98 0.70 -1.97 16 2 C -0.11 -2.61 5.37 30.59 0.16 -2.45 16 3 C -0.09 -2.70 1.93 -11.07 -0.02 -2.72 16 4 H 0.06 1.90 8.08 -2.38 -0.02 1.88 16 5 C -0.10 -2.84 4.99 30.49 0.15 -2.68 16 6 C -0.07 -2.27 6.46 72.02 0.47 -1.80 16 7 S -0.42 -19.04 18.01 -56.49 -1.02 -20.06 16 8 C 0.09 4.38 1.99 29.88 0.06 4.44 16 9 H 0.04 1.89 7.19 -2.39 -0.02 1.87 16 10 C -0.50 -28.68 9.15 25.60 0.23 -28.44 16 11 H 0.05 3.22 7.99 -2.91 -0.02 3.20 16 12 C 0.04 2.13 5.44 84.65 0.46 2.60 16 13 N -0.92 -57.20 13.96 21.45 0.30 -56.91 16 14 Si 0.94 47.18 24.81 68.60 1.70 48.88 16 15 H -0.27 -13.57 7.11 99.48 0.71 -12.87 16 16 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.25 -11.86 6.53 99.48 0.65 -11.21 16 18 C -0.09 -3.56 4.28 30.49 0.13 -3.43 16 19 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.06 1.05 6.31 -2.39 -0.02 1.03 16 22 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.10 2.06 6.05 -2.39 -0.01 2.04 16 25 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 26 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.05 2.19 8.06 -2.38 -0.02 2.17 16 30 H 0.06 2.43 8.04 -2.39 -0.02 2.41 16 Total: -1.00 -64.69 243.67 4.36 -60.34 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.03 Total: 4.21 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 2.34 Total: -36.46 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.30 Total: -56.91 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.70 Total: 48.88 kcal Atomic # 16 Polarization: -19.04 SS G_CDS: -1.02 Total: -20.06 kcal Total: -64.69 4.36 -60.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929817.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.339 kcal (2) G-P(sol) polarization free energy of solvation -64.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds