Wall clock time and date at job start Mon Mar 30 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 120.00263 * 2 1 4 4 H 1.48502 * 109.47131 * 269.99844 * 3 2 1 5 5 H 1.48506 * 109.46977 * 29.99574 * 3 2 1 6 6 H 1.48499 * 109.47051 * 149.99752 * 3 2 1 7 7 C 1.40462 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00106 * 180.02562 * 7 2 1 9 9 C 1.41028 * 119.99843 * 0.02562 * 7 2 1 10 10 O 1.21437 * 119.99988 * 0.02562 * 9 7 2 11 11 C 1.50699 * 119.99813 * 180.02562 * 9 7 2 12 12 C 1.52575 * 109.22791 * 276.23541 * 11 9 7 13 13 C 1.53096 * 109.96185 * 169.00251 * 12 11 9 14 14 S 1.81754 * 108.83703 * 63.02452 * 13 12 11 15 15 C 1.81743 * 102.22021 * 306.73811 * 14 13 12 16 16 C 1.52586 * 109.22556 * 155.00020 * 11 9 7 17 17 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.19118 * 35.62000 * 11 9 7 19 19 H 1.09002 * 109.38965 * 289.15688 * 12 11 9 20 20 H 1.09004 * 109.38998 * 48.85540 * 12 11 9 21 21 H 1.09004 * 109.57375 * 303.22188 * 13 12 11 22 22 H 1.08999 * 109.58185 * 182.83147 * 13 12 11 23 23 H 1.09003 * 109.57653 * 293.45237 * 15 14 13 24 24 H 1.09008 * 109.57539 * 173.07585 * 15 14 13 25 25 H 1.09000 * 109.38705 * 311.14387 * 16 11 9 26 26 H 1.08995 * 109.38874 * 70.84357 * 16 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4401 0.7001 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3023 -2.4378 0.0005 10 8 0.0880 -2.4377 -0.0004 11 6 2.0558 -3.7429 0.0017 12 6 2.4437 -4.1004 -1.4299 13 6 3.4356 -5.2666 -1.4270 14 16 2.6219 -6.7273 -0.7145 15 6 2.0068 -6.0894 0.8723 16 6 1.1757 -4.8306 0.6104 17 1 -0.4849 0.8401 -0.0004 18 1 2.9592 -3.6345 0.6019 19 1 1.5508 -4.3861 -1.9861 20 1 2.9039 -3.2351 -1.9070 21 1 4.3062 -5.0040 -0.8259 22 1 3.7469 -5.4840 -2.4487 23 1 2.8496 -5.8429 1.5182 24 1 1.3846 -6.8444 1.3529 25 1 0.7556 -4.4723 1.5502 26 1 0.3657 -5.0686 -0.0790 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112970105.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:08 Heat of formation + Delta-G solvation = -65.309098 kcal Electronic energy + Delta-G solvation = -11040.818280 eV Core-core repulsion = 9016.693411 eV Total energy + Delta-G solvation = -2024.124869 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -37.78732 -34.83591 -32.60721 -31.04628 -27.96608 -25.96684 -22.46797 -21.20303 -18.82473 -16.46942 -16.35085 -15.36266 -14.17595 -14.05176 -13.49585 -13.24783 -12.94735 -12.37492 -12.26570 -12.05915 -11.44683 -11.20407 -11.01761 -10.72633 -10.42473 -10.25701 -9.99673 -9.70167 -9.34255 -8.94419 -7.46435 -7.29859 -6.24519 -4.92551 2.14594 2.86581 3.02523 3.11675 3.14893 4.00545 4.19258 5.15970 5.26876 5.33107 5.46617 5.53387 5.76412 5.82853 6.00471 6.17558 6.32125 6.51781 6.59097 6.80462 6.94165 7.04080 7.23643 8.05951 8.80773 8.87748 10.32669 10.56151 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.065733 B = 0.009413 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.865074 B = 2973.941392 C = 3195.978272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.083 3.917 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.371 3.629 10 O -0.543 6.543 11 C -0.135 4.135 12 C -0.101 4.101 13 C -0.071 4.071 14 S -0.296 6.296 15 C -0.073 4.073 16 C -0.099 4.099 17 H 0.273 0.727 18 H 0.065 0.935 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -5.696 -0.346 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.265 3.735 10 O -0.431 6.431 11 C -0.155 4.155 12 C -0.140 4.140 13 C -0.220 4.220 14 S -0.071 6.071 15 C -0.221 4.221 16 C -0.138 4.138 17 H 0.084 0.916 18 H 0.083 0.917 19 H 0.089 0.911 20 H 0.096 0.904 21 H 0.098 0.902 22 H 0.115 0.885 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.089 0.911 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.216 -6.692 -0.765 8.519 hybrid contribution 0.829 1.974 0.529 2.205 sum 6.045 -4.718 -0.236 7.672 Atomic orbital electron populations 1.69953 1.07498 1.27919 1.31528 1.26015 0.94568 1.00897 0.92525 0.86432 0.80486 0.81183 0.79157 1.19441 1.20216 1.18628 1.20815 0.94792 0.91978 1.49117 0.91419 1.19353 0.88837 0.87078 0.78209 1.90403 1.15546 1.88607 1.48556 1.21662 0.99700 0.98855 0.95283 1.21525 0.98343 0.96398 0.97767 1.23483 1.00213 0.95254 1.03006 1.86466 1.73691 1.22017 1.24956 1.23500 1.02373 1.01386 0.94808 1.21481 0.97913 0.92282 1.02145 0.91627 0.91658 0.91144 0.90400 0.90207 0.88506 0.90376 0.88589 0.91091 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.32 11.72 55.57 0.65 -20.67 15 2 C 0.08 2.23 5.50 -17.27 -0.10 2.14 15 3 Si 0.90 19.28 29.56 -169.99 -5.03 14.26 15 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 7 C -0.54 -14.59 9.21 -37.69 -0.35 -14.94 15 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 15 9 C 0.37 10.11 5.92 -33.25 -0.20 9.91 15 10 O -0.54 -16.87 14.77 5.42 0.08 -16.79 15 11 C -0.14 -2.89 2.13 -92.20 -0.20 -3.08 15 12 C -0.10 -1.91 5.03 -26.90 -0.14 -2.04 15 13 C -0.07 -1.11 6.46 37.21 0.24 -0.87 15 14 S -0.30 -4.80 22.33 -107.50 -2.40 -7.20 15 15 C -0.07 -1.15 6.45 37.21 0.24 -0.91 15 16 C -0.10 -1.95 4.43 -26.89 -0.12 -2.07 15 17 H 0.27 7.06 8.29 -40.82 -0.34 6.72 15 18 H 0.07 1.33 8.06 -51.93 -0.42 0.91 15 19 H 0.07 1.40 8.06 -51.93 -0.42 0.98 15 20 H 0.08 1.48 8.08 -51.93 -0.42 1.06 15 21 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.10 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.10 1.36 8.14 -51.92 -0.42 0.93 15 25 H 0.07 1.46 8.08 -51.93 -0.42 1.04 15 26 H 0.07 1.57 8.06 -51.93 -0.42 1.15 15 LS Contribution 233.91 15.07 3.52 3.52 Total: -1.00 -30.81 233.91 -7.11 -37.92 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.33 Total: 0.82 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.61 Total: -11.87 kcal Atomic # 7 Polarization: -21.32 SS G_CDS: 0.65 Total: -20.67 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.08 Total: -16.79 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.26 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -2.40 Total: -7.20 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.81 -7.11 -37.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112970105.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.384 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds