Wall clock time and date at job start Mon Mar 30 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 120.00263 * 2 1 4 4 H 1.48502 * 109.47131 * 269.99844 * 3 2 1 5 5 H 1.48506 * 109.46977 * 29.99574 * 3 2 1 6 6 H 1.48499 * 109.47051 * 149.99752 * 3 2 1 7 7 C 1.40462 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00106 * 180.02562 * 7 2 1 9 9 C 1.41028 * 119.99843 * 0.02562 * 7 2 1 10 10 O 1.21437 * 119.99988 * 0.02562 * 9 7 2 11 11 C 1.50699 * 119.99813 * 180.02562 * 9 7 2 12 12 C 1.52575 * 109.22791 * 276.23541 * 11 9 7 13 13 C 1.53096 * 109.96185 * 169.00251 * 12 11 9 14 14 S 1.81754 * 108.83703 * 63.02452 * 13 12 11 15 15 C 1.81743 * 102.22021 * 306.73811 * 14 13 12 16 16 C 1.52586 * 109.22556 * 155.00020 * 11 9 7 17 17 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.19118 * 35.62000 * 11 9 7 19 19 H 1.09002 * 109.38965 * 289.15688 * 12 11 9 20 20 H 1.09004 * 109.38998 * 48.85540 * 12 11 9 21 21 H 1.09004 * 109.57375 * 303.22188 * 13 12 11 22 22 H 1.08999 * 109.58185 * 182.83147 * 13 12 11 23 23 H 1.09003 * 109.57653 * 293.45237 * 15 14 13 24 24 H 1.09008 * 109.57539 * 173.07585 * 15 14 13 25 25 H 1.09000 * 109.38705 * 311.14387 * 16 11 9 26 26 H 1.08995 * 109.38874 * 70.84357 * 16 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4401 0.7001 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3023 -2.4378 0.0005 10 8 0.0880 -2.4377 -0.0004 11 6 2.0558 -3.7429 0.0017 12 6 2.4437 -4.1004 -1.4299 13 6 3.4356 -5.2666 -1.4270 14 16 2.6219 -6.7273 -0.7145 15 6 2.0068 -6.0894 0.8723 16 6 1.1757 -4.8306 0.6104 17 1 -0.4849 0.8401 -0.0004 18 1 2.9592 -3.6345 0.6019 19 1 1.5508 -4.3861 -1.9861 20 1 2.9039 -3.2351 -1.9070 21 1 4.3062 -5.0040 -0.8259 22 1 3.7469 -5.4840 -2.4487 23 1 2.8496 -5.8429 1.5182 24 1 1.3846 -6.8444 1.3529 25 1 0.7556 -4.4723 1.5502 26 1 0.3657 -5.0686 -0.0790 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112970105.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:08 Heat of formation + Delta-G solvation = -84.252017 kcal Electronic energy + Delta-G solvation = -11041.639707 eV Core-core repulsion = 9016.693411 eV Total energy + Delta-G solvation = -2024.946296 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.69215 -36.65111 -34.70754 -32.46166 -29.85470 -27.73083 -23.90982 -22.99231 -20.63761 -18.47814 -17.76147 -17.28733 -15.79251 -15.58102 -15.23596 -14.74291 -14.55364 -13.99410 -13.78619 -13.69150 -13.22292 -13.00975 -12.67672 -12.33668 -12.26973 -12.07493 -11.71083 -11.23666 -10.97789 -10.70845 -9.48868 -8.66280 -8.27528 -7.09950 0.87879 1.34005 1.37063 1.53179 1.58664 2.18307 2.20291 3.33422 3.76317 3.87861 4.04746 4.12711 4.33717 4.37620 4.59987 4.65544 4.77764 4.95219 5.02284 5.03372 5.19698 5.32572 5.40835 5.97233 6.72429 6.82503 8.28332 8.51975 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.065733 B = 0.009413 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.865074 B = 2973.941392 C = 3195.978272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.027 3.973 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.563 4.563 8 H 0.085 0.915 9 C 0.348 3.652 10 O -0.595 6.595 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.062 4.062 14 S -0.298 6.298 15 C -0.064 4.064 16 C -0.093 4.093 17 H 0.280 0.720 18 H 0.079 0.921 19 H 0.051 0.949 20 H 0.074 0.926 21 H 0.098 0.902 22 H 0.121 0.879 23 H 0.096 0.904 24 H 0.116 0.884 25 H 0.053 0.947 26 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.373 -5.662 -0.362 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.246 3.754 10 O -0.488 6.488 11 C -0.148 4.148 12 C -0.135 4.135 13 C -0.210 4.210 14 S -0.073 6.073 15 C -0.212 4.212 16 C -0.132 4.132 17 H 0.091 0.909 18 H 0.097 0.903 19 H 0.070 0.930 20 H 0.093 0.907 21 H 0.116 0.884 22 H 0.140 0.860 23 H 0.114 0.886 24 H 0.134 0.866 25 H 0.072 0.928 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.548 -6.683 -0.783 10.112 hybrid contribution 0.068 1.953 0.527 2.024 sum 7.616 -4.730 -0.256 8.969 Atomic orbital electron populations 1.70097 1.09893 1.29658 1.32422 1.27239 0.95406 1.05503 0.91077 0.85121 0.79084 0.75095 0.79752 1.18309 1.19503 1.17097 1.21361 0.95878 0.92913 1.49231 0.89642 1.20168 0.88568 0.89790 0.76912 1.90362 1.17736 1.89871 1.50839 1.21498 0.99459 0.96392 0.97448 1.21424 0.98605 0.97918 0.95531 1.23461 0.99370 0.93187 1.04982 1.86537 1.73726 1.22007 1.25043 1.23434 1.02635 0.99742 0.95365 1.21356 0.97645 0.93728 1.00503 0.90940 0.90294 0.93034 0.90730 0.88380 0.86041 0.88590 0.86600 0.92836 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.77 11.72 21.91 0.26 -46.51 15 2 C 0.03 1.43 5.50 85.43 0.47 1.90 15 3 Si 0.99 39.05 29.56 68.60 2.03 41.08 15 4 H -0.26 -9.70 7.11 99.48 0.71 -9.00 15 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 6 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 7 C -0.56 -30.86 9.21 23.50 0.22 -30.64 15 8 H 0.09 4.22 7.85 -2.91 -0.02 4.20 15 9 C 0.35 19.43 5.92 26.37 0.16 19.59 15 10 O -0.60 -38.73 14.77 -3.52 -0.05 -38.79 15 11 C -0.13 -5.46 2.13 -11.82 -0.03 -5.49 15 12 C -0.10 -3.52 5.03 30.49 0.15 -3.37 15 13 C -0.06 -1.75 6.46 72.01 0.46 -1.28 15 14 S -0.30 -8.91 22.33 -56.49 -1.26 -10.17 15 15 C -0.06 -1.90 6.45 72.01 0.46 -1.43 15 16 C -0.09 -3.68 4.43 30.49 0.14 -3.54 15 17 H 0.28 14.85 8.29 -92.71 -0.77 14.08 15 18 H 0.08 3.11 8.06 -2.39 -0.02 3.09 15 19 H 0.05 2.07 8.06 -2.39 -0.02 2.05 15 20 H 0.07 2.77 8.08 -2.38 -0.02 2.75 15 21 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 22 H 0.12 2.87 8.14 -2.39 -0.02 2.85 15 23 H 0.10 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.12 3.00 8.14 -2.38 -0.02 2.99 15 25 H 0.05 2.25 8.08 -2.39 -0.02 2.24 15 26 H 0.05 2.23 8.06 -2.39 -0.02 2.21 15 Total: -1.00 -68.35 233.91 4.16 -64.19 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.16 Total: 14.47 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 2.04 Total: -24.27 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.26 Total: -46.51 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.05 Total: -38.79 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.26 Total: -10.17 kcal Total: -68.35 4.16 -64.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112970105.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.062 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds