Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86798 * 120.00004 * 2 1 4 4 H 1.48503 * 109.46825 * 269.99578 * 3 2 1 5 5 H 1.48501 * 109.47405 * 29.99548 * 3 2 1 6 6 H 1.48496 * 109.46868 * 149.99775 * 3 2 1 7 7 C 1.40131 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.41325 * 119.99826 * 0.02562 * 7 2 1 10 10 N 1.33933 * 118.42626 * 359.97438 * 9 7 2 11 11 C 1.31302 * 122.16262 * 180.02562 * 10 9 7 12 12 C 1.41101 * 118.27937 * 0.02562 * 11 10 9 13 13 C 1.39775 * 122.78108 * 180.02562 * 12 11 10 14 14 C 1.36554 * 119.34608 * 179.97438 * 13 12 11 15 15 C 1.39137 * 121.67158 * 359.97438 * 14 13 12 16 16 C 1.36255 * 121.71556 * 0.02562 * 15 14 13 17 17 C 1.40548 * 119.32132 * 0.02562 * 16 15 14 18 18 N 1.33021 * 118.42258 * 180.02562 * 9 7 2 19 19 H 0.97005 * 119.99441 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.85916 * 180.02562 * 11 10 9 21 21 H 1.07996 * 120.32625 * 359.95268 * 13 12 11 22 22 H 1.08004 * 119.16295 * 180.02562 * 14 13 12 23 23 H 1.07995 * 119.14319 * 180.27849 * 15 14 13 24 24 H 1.08000 * 120.33457 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4882 2.0463 -1.4001 5 1 1.4381 2.6527 0.6999 6 1 3.5381 1.4401 0.7001 7 6 2.0073 -1.2136 0.0005 8 1 3.0872 -1.2137 0.0010 9 6 1.3006 -2.4375 0.0005 10 7 -0.0383 -2.4006 0.0005 11 6 -0.7675 -3.4924 0.0010 12 6 -0.1055 -4.7385 0.0021 13 6 -0.7883 -5.9582 0.0022 14 6 -0.0765 -7.1235 0.0028 15 6 1.3149 -7.1298 0.0028 16 6 2.0363 -5.9739 0.0027 17 6 1.3612 -4.7412 0.0032 18 7 1.9971 -3.5707 0.0016 19 1 -0.4849 0.8401 -0.0004 20 1 -1.8462 -3.4382 0.0006 21 1 -1.8680 -5.9787 0.0022 22 1 -0.6070 -8.0643 0.0024 23 1 1.8366 -8.0753 -0.0013 24 1 3.1159 -6.0047 0.0031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149516147.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = 39.635733 kcal Electronic energy + Delta-G solvation = -11706.753510 eV Core-core repulsion = 9584.028190 eV Total energy + Delta-G solvation = -2122.725320 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.064 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.08720 -38.06891 -35.47690 -34.39933 -31.67235 -31.09784 -28.19279 -25.02730 -23.98497 -22.56634 -20.24196 -18.45013 -17.98776 -17.26775 -16.30130 -15.27529 -15.19926 -15.17783 -14.61543 -14.13116 -13.32784 -13.16973 -12.82714 -12.75614 -12.58905 -12.24583 -11.94047 -11.65062 -11.17214 -10.97180 -9.68969 -9.35071 -9.09494 -8.55088 -6.76046 -0.13861 0.38791 1.37333 1.38866 1.53715 1.58201 2.15864 2.36160 2.93920 3.83495 3.90803 3.95114 4.02682 4.30932 4.37641 4.57373 4.74056 4.96159 5.09558 5.18232 5.47765 5.61447 5.70861 5.78277 6.03928 6.23769 6.42482 6.51607 7.11777 8.12930 8.25100 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.076414 B = 0.009437 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.338114 B = 2966.408088 C = 3322.904479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.022 3.978 3 Si 1.005 2.995 4 H -0.257 1.257 5 H -0.256 1.256 6 H -0.258 1.258 7 C -0.419 4.419 8 H 0.089 0.911 9 C 0.357 3.643 10 N -0.515 5.515 11 C 0.174 3.826 12 C -0.292 4.292 13 C -0.037 4.037 14 C -0.198 4.198 15 C -0.056 4.056 16 C -0.184 4.184 17 C 0.170 3.830 18 N -0.652 5.652 19 H 0.290 0.710 20 H 0.179 0.821 21 H 0.150 0.850 22 H 0.152 0.848 23 H 0.152 0.848 24 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -5.182 0.000 5.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.203 4.203 3 Si 0.823 3.177 4 H -0.182 1.182 5 H -0.180 1.180 6 H -0.182 1.182 7 C -0.453 4.453 8 H 0.108 0.892 9 C 0.122 3.878 10 N -0.229 5.229 11 C -0.012 4.012 12 C -0.299 4.299 13 C -0.058 4.058 14 C -0.217 4.217 15 C -0.077 4.077 16 C -0.204 4.204 17 C 0.034 3.966 18 N -0.376 5.376 19 H 0.101 0.899 20 H 0.196 0.804 21 H 0.168 0.832 22 H 0.170 0.830 23 H 0.170 0.830 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.102 -4.039 0.003 4.553 hybrid contribution -0.050 -0.069 -0.008 0.085 sum -2.151 -4.107 -0.005 4.636 Atomic orbital electron populations 1.70160 1.08960 1.30369 1.25940 1.27200 0.96071 1.04823 0.92254 0.84884 0.78746 0.74180 0.79938 1.18160 1.17983 1.18162 1.19890 0.95152 0.89077 1.41173 0.89245 1.20334 0.86227 0.92270 0.89006 1.68930 1.07718 1.30657 1.15556 1.24094 1.00749 0.87377 0.89019 1.20586 0.95083 0.96962 1.17299 1.21056 1.00286 0.90506 0.93908 1.20921 0.93930 0.98647 1.08240 1.21071 0.94808 0.97501 0.94315 1.20653 0.99577 0.90618 1.09553 1.20641 0.90781 0.93509 0.91670 1.69185 1.39081 0.98058 1.31281 0.89863 0.80397 0.83221 0.83038 0.83036 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.17 11.35 21.85 0.25 -37.92 14 2 C 0.02 1.09 5.50 85.33 0.47 1.56 14 3 Si 1.00 37.36 29.56 68.60 2.03 39.39 14 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 5 H -0.26 -8.73 7.11 99.48 0.71 -8.02 14 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 14 7 C -0.42 -24.07 9.34 23.49 0.22 -23.85 14 8 H 0.09 5.01 7.85 -2.91 -0.02 4.99 14 9 C 0.36 21.50 7.34 135.07 0.99 22.50 14 10 N -0.52 -29.24 7.66 -192.85 -1.48 -30.72 14 11 C 0.17 8.27 11.21 85.47 0.96 9.23 14 12 C -0.29 -13.36 5.89 -20.00 -0.12 -13.48 14 13 C -0.04 -1.27 9.84 22.25 0.22 -1.05 14 14 C -0.20 -5.95 9.92 22.09 0.22 -5.73 14 15 C -0.06 -1.81 9.90 22.02 0.22 -1.59 14 16 C -0.18 -7.75 10.06 22.37 0.22 -7.53 14 17 C 0.17 8.78 6.77 41.71 0.28 9.06 14 18 N -0.65 -38.40 10.37 -184.03 -1.91 -40.31 14 19 H 0.29 13.23 8.29 -92.70 -0.77 12.46 14 20 H 0.18 6.76 8.06 -2.91 -0.02 6.74 14 21 H 0.15 3.91 8.06 -2.91 -0.02 3.89 14 22 H 0.15 3.22 8.06 -2.91 -0.02 3.20 14 23 H 0.15 3.56 8.06 -2.91 -0.02 3.54 14 24 H 0.12 4.77 8.06 -2.91 -0.02 4.75 14 Total: -1.00 -69.93 222.44 3.79 -66.14 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.21 Total: 14.30 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 3.68 Total: -10.88 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -3.14 Total: -108.95 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -69.93 3.79 -66.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149516147.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.775 kcal (2) G-P(sol) polarization free energy of solvation -69.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds