Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00335 * 2 1 4 4 H 1.48496 * 109.46969 * 269.99686 * 3 2 1 5 5 H 1.48492 * 109.47130 * 30.00145 * 3 2 1 6 6 H 1.48503 * 109.47111 * 149.99869 * 3 2 1 7 7 C 1.37886 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99955 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99703 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.46589 * 179.97438 * 9 7 2 11 11 C 1.32157 * 124.46816 * 94.97748 * 10 9 7 12 12 C 1.51082 * 108.27302 * 180.02562 * 11 10 9 13 13 C 1.50927 * 105.46307 * 359.97438 * 12 11 10 14 14 C 1.37542 * 133.20964 * 179.97438 * 13 12 11 15 15 C 1.38461 * 119.95653 * 180.02562 * 14 13 12 16 16 C 1.38375 * 120.10548 * 0.02676 * 15 14 13 17 17 C 1.37908 * 120.37044 * 359.97223 * 16 15 14 18 18 C 1.39623 * 106.29977 * 0.02562 * 13 12 11 19 19 H 0.96998 * 119.99734 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47588 * 60.00342 * 9 7 2 21 21 H 1.08993 * 109.47171 * 299.99703 * 9 7 2 22 22 H 1.08003 * 125.85993 * 0.02562 * 11 10 9 23 23 H 1.09004 * 110.24662 * 241.00132 * 12 11 10 24 24 H 1.09001 * 110.24631 * 118.99972 * 12 11 10 25 25 H 1.08000 * 120.02110 * 359.97438 * 14 13 12 26 26 H 1.08002 * 119.95063 * 180.02562 * 15 14 13 27 27 H 1.07993 * 119.81315 * 179.69753 * 16 15 14 28 28 H 1.07992 * 120.05036 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.3525 -3.2884 -1.0855 12 6 4.8007 -4.6689 -0.6659 13 6 4.6705 -4.6946 0.8375 14 6 4.9214 -5.6564 1.7881 15 6 4.6995 -5.3800 3.1266 16 6 4.2251 -4.1378 3.5095 17 6 3.9706 -3.1669 2.5638 18 6 4.1916 -3.4373 1.2109 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6810 0.8905 21 1 3.8751 -0.6798 -0.8894 22 1 4.3153 -2.9159 -2.0986 23 1 5.8382 -4.8334 -0.9573 24 1 4.1577 -5.4266 -1.1137 25 1 5.2905 -6.6268 1.4907 26 1 4.8969 -6.1352 3.8731 27 1 4.0490 -3.9290 4.5543 28 1 3.6008 -2.1990 2.8684 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196404764.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = 37.066060 kcal Electronic energy + Delta-G solvation = -11858.298470 eV Core-core repulsion = 9839.002064 eV Total energy + Delta-G solvation = -2019.296406 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.78325 -35.73599 -33.04013 -31.28201 -29.56986 -28.14412 -25.81719 -22.33377 -21.75070 -20.63562 -18.23563 -16.74424 -15.40338 -14.88901 -14.73567 -14.19141 -13.91110 -13.25047 -12.96156 -12.45129 -12.03792 -11.79943 -11.53871 -11.46503 -11.00493 -10.53021 -10.33388 -10.19257 -9.93731 -9.41807 -8.93457 -8.56487 -8.35902 -7.45750 -6.05556 -4.04041 1.44605 1.80089 3.14899 3.29219 3.36981 3.40190 4.38816 4.42833 4.85656 5.15553 5.28741 5.33947 5.38499 5.53671 5.83086 5.89374 5.97759 6.05000 6.28764 6.40425 6.46298 6.79243 6.85004 6.89156 7.02191 7.12215 7.34312 7.47669 7.63620 7.77032 8.53102 9.00488 9.54995 11.07639 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.043174 B = 0.009790 C = 0.008880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.376869 B = 2859.437128 C = 3152.376105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.023 3.977 10 C -0.042 4.042 11 C -0.196 4.196 12 C -0.056 4.056 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.130 4.130 16 C -0.128 4.128 17 C -0.089 4.089 18 C -0.048 4.048 19 H 0.264 0.736 20 H 0.026 0.974 21 H 0.024 0.976 22 H 0.138 0.862 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.347 -8.005 2.866 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.091 0.909 9 C -0.014 4.014 10 C -0.042 4.042 11 C -0.213 4.213 12 C -0.092 4.092 13 C -0.111 4.111 14 C -0.127 4.127 15 C -0.148 4.148 16 C -0.146 4.146 17 C -0.107 4.107 18 C -0.048 4.048 19 H 0.073 0.927 20 H 0.044 0.956 21 H 0.042 0.958 22 H 0.156 0.844 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.186 -7.890 2.875 13.201 hybrid contribution 0.167 0.917 0.037 0.933 sum 10.353 -6.973 2.912 12.817 Atomic orbital electron populations 1.69903 1.06250 1.26899 1.50924 1.24997 0.94725 0.98958 0.94594 0.86817 0.80418 0.83728 0.78646 1.20160 1.21253 1.18947 1.20926 0.88362 0.94576 1.50921 0.90927 1.18537 0.97284 0.88452 0.97097 1.20928 0.95183 0.97196 0.90907 1.23297 1.04808 0.94751 0.98486 1.19852 1.01208 0.97289 0.90813 1.20583 0.99985 0.94685 0.95835 1.20176 1.02064 0.98229 0.92248 1.21003 1.01395 0.96994 0.95421 1.20948 1.00820 0.93713 0.99083 1.21032 0.98189 0.99780 0.91710 1.19894 0.97403 0.94114 0.93431 0.92650 0.95623 0.95781 0.84397 0.89480 0.89242 0.86690 0.86429 0.86330 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 15 7 C -0.51 -14.74 9.65 -34.44 -0.33 -15.08 15 8 H 0.07 2.31 7.98 -52.48 -0.42 1.89 15 9 C 0.02 0.58 4.45 -29.04 -0.13 0.45 15 10 C -0.04 -0.92 5.33 -102.79 -0.55 -1.47 15 11 C -0.20 -3.68 10.91 -36.05 -0.39 -4.07 15 12 C -0.06 -0.88 6.76 -28.74 -0.19 -1.07 15 13 C -0.11 -1.94 6.38 -104.25 -0.66 -2.61 15 14 C -0.11 -1.64 10.03 -39.75 -0.40 -2.04 15 15 C -0.13 -1.87 10.06 -39.45 -0.40 -2.27 15 16 C -0.13 -2.01 10.02 -39.65 -0.40 -2.41 15 17 C -0.09 -1.70 10.08 -39.15 -0.39 -2.09 15 18 C -0.05 -0.99 6.17 -105.07 -0.65 -1.63 15 19 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 20 H 0.03 0.63 7.20 -51.93 -0.37 0.25 15 21 H 0.02 0.57 7.55 -51.93 -0.39 0.18 15 22 H 0.14 2.38 8.06 -52.48 -0.42 1.96 15 23 H 0.09 1.16 8.14 -51.93 -0.42 0.73 15 24 H 0.09 1.29 8.14 -51.93 -0.42 0.86 15 25 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 26 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 27 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 28 H 0.13 2.42 8.06 -52.49 -0.42 2.00 15 LS Contribution 245.09 15.07 3.69 3.69 Total: -1.00 -31.37 245.09 -8.11 -39.48 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.31 Total: -0.60 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -4.59 Total: -32.38 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.37 -8.11 -39.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196404764.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.547 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds