Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00335 * 2 1 4 4 H 1.48496 * 109.46969 * 269.99686 * 3 2 1 5 5 H 1.48492 * 109.47130 * 30.00145 * 3 2 1 6 6 H 1.48503 * 109.47111 * 149.99869 * 3 2 1 7 7 C 1.37886 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99955 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99703 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.46589 * 179.97438 * 9 7 2 11 11 C 1.32157 * 124.46816 * 94.97748 * 10 9 7 12 12 C 1.51082 * 108.27302 * 180.02562 * 11 10 9 13 13 C 1.50927 * 105.46307 * 359.97438 * 12 11 10 14 14 C 1.37542 * 133.20964 * 179.97438 * 13 12 11 15 15 C 1.38461 * 119.95653 * 180.02562 * 14 13 12 16 16 C 1.38375 * 120.10548 * 0.02676 * 15 14 13 17 17 C 1.37908 * 120.37044 * 359.97223 * 16 15 14 18 18 C 1.39623 * 106.29977 * 0.02562 * 13 12 11 19 19 H 0.96998 * 119.99734 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47588 * 60.00342 * 9 7 2 21 21 H 1.08993 * 109.47171 * 299.99703 * 9 7 2 22 22 H 1.08003 * 125.85993 * 0.02562 * 11 10 9 23 23 H 1.09004 * 110.24662 * 241.00132 * 12 11 10 24 24 H 1.09001 * 110.24631 * 118.99972 * 12 11 10 25 25 H 1.08000 * 120.02110 * 359.97438 * 14 13 12 26 26 H 1.08002 * 119.95063 * 180.02562 * 15 14 13 27 27 H 1.07993 * 119.81315 * 179.69753 * 16 15 14 28 28 H 1.07992 * 120.05036 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.3525 -3.2884 -1.0855 12 6 4.8007 -4.6689 -0.6659 13 6 4.6705 -4.6946 0.8375 14 6 4.9214 -5.6564 1.7881 15 6 4.6995 -5.3800 3.1266 16 6 4.2251 -4.1378 3.5095 17 6 3.9706 -3.1669 2.5638 18 6 4.1916 -3.4373 1.2109 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6810 0.8905 21 1 3.8751 -0.6798 -0.8894 22 1 4.3153 -2.9159 -2.0986 23 1 5.8382 -4.8334 -0.9573 24 1 4.1577 -5.4266 -1.1137 25 1 5.2905 -6.6268 1.4907 26 1 4.8969 -6.1352 3.8731 27 1 4.0490 -3.9290 4.5543 28 1 3.6008 -2.1990 2.8684 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196404764.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = 19.097602 kcal Electronic energy + Delta-G solvation = -11859.077641 eV Core-core repulsion = 9839.002064 eV Total energy + Delta-G solvation = -2020.075577 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.10419 -37.11685 -35.10731 -32.91302 -31.16084 -29.51431 -27.45717 -24.14734 -23.20619 -21.89044 -19.69663 -18.99183 -16.91980 -16.24846 -16.11045 -15.92221 -15.27190 -14.77736 -14.69335 -14.10341 -13.70274 -13.36175 -13.00294 -12.95646 -12.55752 -12.20216 -12.04034 -11.78844 -11.68176 -11.43803 -10.81322 -10.49178 -9.60395 -8.88372 -8.32759 -6.37515 0.12837 0.53955 1.32634 1.34870 1.47174 1.71213 2.32535 3.00900 3.04891 3.62027 3.81394 4.10392 4.19863 4.29180 4.55459 4.68596 4.77703 4.83199 4.88252 4.96490 5.01897 5.15704 5.21340 5.52905 5.54254 5.62020 5.80388 5.83370 6.09300 6.18069 6.26648 6.68347 7.25745 8.84265 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.043174 B = 0.009790 C = 0.008880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.376869 B = 2859.437128 C = 3152.376105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.518 4.518 8 H 0.023 0.977 9 C 0.031 3.969 10 C -0.095 4.095 11 C -0.179 4.179 12 C -0.050 4.050 13 C -0.120 4.120 14 C -0.105 4.105 15 C -0.121 4.121 16 C -0.129 4.129 17 C -0.124 4.124 18 C -0.090 4.090 19 H 0.268 0.732 20 H 0.019 0.981 21 H 0.031 0.969 22 H 0.149 0.851 23 H 0.123 0.877 24 H 0.110 0.890 25 H 0.155 0.845 26 H 0.160 0.840 27 H 0.143 0.857 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.634 -9.395 3.002 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.556 4.556 8 H 0.041 0.959 9 C -0.006 4.006 10 C -0.095 4.095 11 C -0.197 4.197 12 C -0.086 4.086 13 C -0.120 4.120 14 C -0.122 4.122 15 C -0.139 4.139 16 C -0.146 4.146 17 C -0.142 4.142 18 C -0.090 4.090 19 H 0.077 0.923 20 H 0.038 0.962 21 H 0.049 0.951 22 H 0.167 0.833 23 H 0.140 0.860 24 H 0.128 0.872 25 H 0.172 0.828 26 H 0.177 0.823 27 H 0.161 0.839 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.486 -9.294 3.009 15.853 hybrid contribution -0.583 1.219 0.010 1.352 sum 11.902 -8.075 3.019 14.696 Atomic orbital electron populations 1.70059 1.08278 1.28289 1.52364 1.25990 0.95630 1.03356 0.93928 0.85634 0.79296 0.78082 0.79544 1.18564 1.20555 1.17478 1.21123 0.90876 0.92814 1.50741 0.95891 1.18336 0.94178 0.91240 0.96832 1.20959 0.98622 0.96555 0.93344 1.23754 1.01679 0.96148 0.98120 1.19927 1.03411 0.95366 0.89879 1.20917 0.99971 0.93974 0.97183 1.20668 1.00531 0.99087 0.91939 1.21520 0.99156 0.96866 0.96351 1.21264 1.00028 0.93714 0.99627 1.21104 1.00452 1.00128 0.92561 1.20060 0.99850 0.95691 0.93369 0.92303 0.96227 0.95089 0.83326 0.85969 0.87232 0.82761 0.82253 0.83915 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 15 2 C 0.01 0.47 5.47 84.66 0.46 0.93 15 3 Si 0.95 45.32 27.47 68.60 1.88 47.21 15 4 H -0.26 -11.75 7.11 99.48 0.71 -11.05 15 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 15 6 H -0.25 -11.29 6.54 99.48 0.65 -10.64 15 7 C -0.52 -31.49 9.65 25.60 0.25 -31.25 15 8 H 0.02 1.56 7.98 -2.91 -0.02 1.54 15 9 C 0.03 1.59 4.45 29.10 0.13 1.72 15 10 C -0.09 -4.25 5.33 -18.43 -0.10 -4.34 15 11 C -0.18 -6.61 10.91 24.81 0.27 -6.34 15 12 C -0.05 -1.45 6.76 29.29 0.20 -1.25 15 13 C -0.12 -3.98 6.38 -19.62 -0.13 -4.10 15 14 C -0.10 -2.74 10.03 22.16 0.22 -2.51 15 15 C -0.12 -3.04 10.06 22.36 0.22 -2.81 15 16 C -0.13 -3.88 10.02 22.22 0.22 -3.66 15 17 C -0.12 -4.89 10.08 22.55 0.23 -4.67 15 18 C -0.09 -3.71 6.17 -20.15 -0.12 -3.84 15 19 H 0.27 15.95 8.31 -92.71 -0.77 15.18 15 20 H 0.02 0.99 7.20 -2.39 -0.02 0.98 15 21 H 0.03 1.49 7.55 -2.39 -0.02 1.48 15 22 H 0.15 4.97 8.06 -2.91 -0.02 4.94 15 23 H 0.12 2.71 8.14 -2.39 -0.02 2.69 15 24 H 0.11 2.77 8.14 -2.39 -0.02 2.75 15 25 H 0.15 2.81 8.06 -2.91 -0.02 2.79 15 26 H 0.16 2.67 8.06 -2.91 -0.02 2.64 15 27 H 0.14 3.46 8.06 -2.91 -0.02 3.44 15 28 H 0.10 4.26 8.06 -2.91 -0.02 4.24 15 Total: -1.00 -72.05 245.09 5.12 -66.93 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.08 Total: 8.73 kcal Atomic # 6 Polarization: -63.98 SS G_CDS: 1.86 Total: -62.12 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.30 Total: -60.75 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -72.05 5.12 -66.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196404764.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.030 kcal (2) G-P(sol) polarization free energy of solvation -72.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds