Wall clock time and date at job start Mon Mar 30 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99719 * 2 1 4 4 H 1.48503 * 109.47100 * 270.00116 * 3 2 1 5 5 H 1.48504 * 109.47381 * 30.00014 * 3 2 1 6 6 H 1.48497 * 109.46997 * 150.00000 * 3 2 1 7 7 C 1.37878 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47294 * 179.97438 * 9 7 2 11 11 C 1.32158 * 125.86309 * 94.99428 * 10 9 7 12 12 C 1.47462 * 111.06543 * 180.02562 * 11 10 9 13 13 C 1.39728 * 131.91840 * 180.02562 * 12 11 10 14 14 C 1.37903 * 119.89703 * 180.27739 * 13 12 11 15 15 C 1.38373 * 120.36871 * 359.36927 * 14 13 12 16 16 C 1.38458 * 120.10796 * 0.65895 * 15 14 13 17 17 C 1.37546 * 119.95527 * 359.65888 * 16 15 14 18 18 C 1.50929 * 133.21442 * 180.02562 * 17 16 15 19 19 H 0.96997 * 120.00257 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47518 * 59.99625 * 9 7 2 21 21 H 1.09002 * 109.46850 * 300.00081 * 9 7 2 22 22 H 1.08001 * 124.46707 * 0.02562 * 11 10 9 23 23 H 1.08002 * 120.04792 * 359.97438 * 13 12 11 24 24 H 1.08000 * 119.81548 * 179.72212 * 14 13 12 25 25 H 1.07996 * 119.94325 * 180.31751 * 15 14 13 26 26 H 1.08005 * 120.02665 * 179.67829 * 16 15 14 27 27 H 1.08992 * 110.24856 * 298.96502 * 18 17 16 28 28 H 1.09007 * 110.24245 * 60.87628 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6626 -4.2936 1.0675 12 6 3.6145 -5.3556 0.6924 13 6 4.3226 -6.2869 1.4562 14 6 5.1685 -7.1829 0.8370 15 6 5.3108 -7.1741 -0.5394 16 6 4.6133 -6.2542 -1.3038 17 6 3.7721 -5.3522 -0.6949 18 6 2.8879 -4.2470 -1.2190 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5566 0.8903 22 1 2.3588 -4.0751 2.0806 23 1 4.2114 -6.3018 2.5304 24 1 5.7186 -7.8993 1.4291 25 1 5.9712 -7.8822 -1.0176 26 1 4.7293 -6.2451 -2.3776 27 1 3.4873 -3.4967 -1.7343 28 1 2.1340 -4.6546 -1.8927 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000202614962.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:48 Heat of formation + Delta-G solvation = 15.980607 kcal Electronic energy + Delta-G solvation = -11617.652207 eV Core-core repulsion = 9597.441467 eV Total energy + Delta-G solvation = -2020.210740 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.08788 -37.30150 -35.03483 -32.21931 -31.67562 -28.46934 -28.02071 -25.25511 -22.55567 -21.90169 -19.58630 -18.52977 -17.18570 -16.59469 -16.13676 -15.67336 -15.41258 -14.51905 -14.37931 -14.15621 -13.63919 -13.44170 -13.00407 -12.80128 -12.57209 -12.26911 -12.04793 -11.72879 -11.67656 -11.51005 -10.72534 -10.61943 -9.62506 -8.86574 -8.21149 -6.36454 0.12428 0.53420 1.39067 1.40588 1.51731 1.68637 2.40066 3.04950 3.08078 3.54460 3.80047 4.06280 4.19286 4.28626 4.56134 4.67532 4.72775 4.74562 4.89109 5.12416 5.14064 5.18736 5.29149 5.58510 5.62970 5.70371 5.74147 5.83725 6.05241 6.15916 6.21185 6.75537 7.32426 8.86830 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.061437 B = 0.007216 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.641040 B = 3879.399954 C = 3911.407505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.069 3.931 10 C -0.085 4.085 11 C -0.181 4.181 12 C -0.081 4.081 13 C -0.122 4.122 14 C -0.121 4.121 15 C -0.125 4.125 16 C -0.106 4.106 17 C -0.125 4.125 18 C -0.058 4.058 19 H 0.267 0.733 20 H 0.012 0.988 21 H 0.005 0.995 22 H 0.116 0.884 23 H 0.130 0.870 24 H 0.154 0.846 25 H 0.157 0.843 26 H 0.142 0.858 27 H 0.098 0.902 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.858 -12.167 -1.140 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.032 3.968 10 C -0.085 4.085 11 C -0.200 4.200 12 C -0.081 4.081 13 C -0.140 4.140 14 C -0.138 4.138 15 C -0.143 4.143 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.094 4.094 19 H 0.076 0.924 20 H 0.030 0.970 21 H 0.024 0.976 22 H 0.134 0.866 23 H 0.148 0.852 24 H 0.171 0.829 25 H 0.175 0.825 26 H 0.159 0.841 27 H 0.116 0.884 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.709 -12.063 -1.141 15.527 hybrid contribution -0.225 1.186 0.246 1.232 sum 9.484 -10.877 -0.895 14.459 Atomic orbital electron populations 1.70069 1.07664 1.28098 1.51042 1.25928 0.95795 1.03131 0.94418 0.85407 0.78487 0.78241 0.78691 1.19402 1.20418 1.19204 1.21340 0.93140 0.91117 1.51398 0.92707 1.17775 0.92551 0.90306 0.96182 1.22915 0.95858 0.94165 0.95529 1.21637 1.01318 0.98459 0.98538 1.19994 0.97279 0.96101 0.94746 1.21124 0.97316 0.95403 1.00192 1.21338 0.98250 0.98817 0.95433 1.21495 0.99898 0.98959 0.93928 1.20624 0.96057 0.94693 1.01027 1.20690 0.99024 0.97872 0.94915 1.19892 0.97362 0.95196 0.96953 0.92434 0.96999 0.97629 0.86557 0.85193 0.82880 0.82517 0.84060 0.88447 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.75 15 2 C 0.01 0.33 5.46 84.66 0.46 0.79 15 3 Si 0.97 44.36 29.54 68.60 2.03 46.39 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 7 C -0.53 -30.72 9.09 25.60 0.23 -30.48 15 8 H 0.05 3.12 7.74 -2.91 -0.02 3.09 15 9 C 0.07 3.74 5.48 29.10 0.16 3.90 15 10 C -0.08 -3.86 5.54 -17.33 -0.10 -3.96 15 11 C -0.18 -7.69 10.63 23.70 0.25 -7.44 15 12 C -0.08 -2.96 6.23 -20.15 -0.13 -3.08 15 13 C -0.12 -3.58 10.10 22.55 0.23 -3.35 15 14 C -0.12 -2.78 10.02 22.22 0.22 -2.56 15 15 C -0.13 -2.76 10.06 22.35 0.22 -2.54 15 16 C -0.11 -2.83 10.03 22.16 0.22 -2.61 15 17 C -0.13 -4.28 6.38 -19.62 -0.13 -4.41 15 18 C -0.06 -2.21 6.74 29.30 0.20 -2.01 15 19 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 20 H 0.01 0.67 8.14 -2.39 -0.02 0.65 15 21 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 22 H 0.12 4.84 8.06 -2.91 -0.02 4.82 15 23 H 0.13 3.32 8.06 -2.91 -0.02 3.29 15 24 H 0.15 2.41 8.06 -2.91 -0.02 2.39 15 25 H 0.16 2.27 8.06 -2.91 -0.02 2.24 15 26 H 0.14 3.00 8.06 -2.91 -0.02 2.97 15 27 H 0.10 3.67 8.14 -2.39 -0.02 3.65 15 28 H 0.10 3.60 8.14 -2.38 -0.02 3.58 15 Total: -1.00 -65.19 248.80 5.30 -59.90 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.13 Total: 7.23 kcal Atomic # 6 Polarization: -59.61 SS G_CDS: 1.85 Total: -57.76 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.19 5.30 -59.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000202614962.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.876 kcal (2) G-P(sol) polarization free energy of solvation -65.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds