Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99866 * 2 1 4 4 H 1.48506 * 109.46983 * 239.99482 * 3 2 1 5 5 H 1.48501 * 109.47461 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47363 * 119.99906 * 3 2 1 7 7 C 1.37876 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99700 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.81342 * 59.47462 * 9 7 2 11 11 C 1.53022 * 109.64663 * 298.94684 * 9 7 2 12 12 C 1.50065 * 110.19829 * 289.55985 * 11 9 7 13 13 C 1.29443 * 124.07980 * 343.32387 * 12 11 9 14 14 C 1.50070 * 124.07366 * 359.94620 * 13 12 11 15 15 C 1.53027 * 110.14693 * 343.13269 * 14 13 12 16 16 H 1.09001 * 109.64307 * 289.75441 * 15 14 13 17 17 C 1.52998 * 109.64311 * 169.11916 * 15 14 13 18 18 Cl 1.80304 * 109.47036 * 65.00108 * 17 15 14 19 19 H 0.97007 * 120.00502 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.36071 * 49.95801 * 11 9 7 21 21 H 1.08994 * 109.36386 * 169.68050 * 11 9 7 22 22 H 1.08004 * 117.96441 * 163.07979 * 12 11 9 23 23 H 1.08002 * 117.96781 * 180.23731 * 13 12 11 24 24 H 1.09000 * 109.35664 * 103.33988 * 14 13 12 25 25 H 1.09003 * 109.36112 * 222.92697 * 14 13 12 26 26 H 1.09003 * 109.46876 * 185.00205 * 17 15 14 27 27 H 1.09001 * 109.47208 * 305.00177 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6155 -2.5588 -0.8831 11 6 0.3892 -2.5956 1.2613 12 6 1.2584 -2.7858 2.4697 13 6 2.4961 -3.1617 2.4211 14 6 3.2345 -3.4610 1.1493 15 6 2.2443 -3.6680 0.0011 16 1 1.7070 -4.6053 0.1452 17 6 2.9992 -3.7021 -1.3292 18 17 4.0809 -5.1441 -1.3696 19 1 -0.4851 0.8401 -0.0004 20 1 -0.1925 -1.6805 1.3723 21 1 -0.2875 -3.4453 1.1723 22 1 0.8255 -2.5935 3.4403 23 1 3.0293 -3.2712 3.3539 24 1 3.8955 -2.6278 0.9107 25 1 3.8292 -4.3650 1.2809 26 1 2.2852 -3.7603 -2.1507 27 1 3.5972 -2.7964 -1.4310 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212047137.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = -17.511731 kcal Electronic energy + Delta-G solvation = -11269.443135 eV Core-core repulsion = 9245.347209 eV Total energy + Delta-G solvation = -2024.095926 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.066 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.04142 -35.25782 -32.59953 -31.49511 -29.22476 -25.98503 -24.59541 -21.59063 -19.86328 -17.63601 -15.23504 -15.04417 -14.64544 -13.79732 -13.65440 -12.92253 -12.36226 -12.13093 -11.65446 -11.58967 -11.13858 -10.98152 -10.82988 -10.58274 -10.09176 -10.05165 -9.77136 -9.20605 -9.01595 -8.71399 -8.40453 -7.84784 -6.02278 -4.07373 2.94264 3.29720 3.34756 3.36813 3.37756 4.41413 5.28992 5.50275 5.56187 5.89063 5.98632 6.25434 6.33859 6.44125 6.60520 6.68544 6.82471 6.95355 6.99303 7.21816 7.50554 7.62199 7.91288 7.96444 8.13358 8.40167 8.93236 9.57166 11.03956 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.034812 B = 0.013038 C = 0.011208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.124114 B = 2147.126372 C = 2497.545617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.055 3.945 10 H 0.030 0.970 11 C -0.089 4.089 12 C -0.121 4.121 13 C -0.172 4.172 14 C -0.065 4.065 15 C -0.088 4.088 16 H 0.057 0.943 17 C -0.004 4.004 18 Cl -0.228 7.228 19 H 0.260 0.740 20 H 0.103 0.897 21 H 0.031 0.969 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -5.333 0.360 6.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.037 3.963 10 H 0.048 0.952 11 C -0.126 4.126 12 C -0.140 4.140 13 C -0.191 4.191 14 C -0.102 4.102 15 C -0.107 4.107 16 H 0.076 0.924 17 C -0.066 4.066 18 Cl -0.202 7.202 19 H 0.070 0.930 20 H 0.121 0.879 21 H 0.050 0.950 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.505 -5.305 0.357 6.368 hybrid contribution 0.492 1.022 0.182 1.149 sum 3.996 -4.283 0.539 5.882 Atomic orbital electron populations 1.69843 1.05859 1.26535 1.50844 1.24922 0.94775 0.98921 0.95214 0.86747 0.79696 0.83526 0.78599 1.20344 1.21388 1.20328 1.21111 0.92775 0.90169 1.50110 0.92411 1.18766 0.92124 0.91266 0.94159 0.95201 1.20584 0.97320 1.01075 0.93634 1.22053 0.96119 0.97368 0.98411 1.21673 0.96135 1.04194 0.97057 1.20276 0.97184 0.99946 0.92814 1.21555 0.97117 1.00269 0.91761 0.92419 1.24650 0.94037 0.86984 1.00975 1.98657 1.71809 1.50550 1.99178 0.92965 0.87878 0.95044 0.90419 0.90091 0.90955 0.93162 0.89675 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 11.39 55.43 0.63 -23.84 15 2 C 0.06 1.65 5.27 -17.82 -0.09 1.56 15 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.50 -12.75 6.82 -34.44 -0.24 -12.98 15 8 H 0.06 1.45 5.75 -52.49 -0.30 1.15 15 9 C 0.06 1.29 2.09 -91.56 -0.19 1.10 15 10 H 0.03 0.75 8.14 -51.92 -0.42 0.33 15 11 C -0.09 -2.03 5.43 -28.18 -0.15 -2.19 15 12 C -0.12 -2.55 9.54 -35.90 -0.34 -2.89 15 13 C -0.17 -3.42 9.61 -35.90 -0.35 -3.76 15 14 C -0.07 -1.26 4.59 -28.17 -0.13 -1.39 15 15 C -0.09 -1.74 2.10 -90.40 -0.19 -1.93 15 16 H 0.06 1.12 8.12 -51.93 -0.42 0.69 15 17 C 0.00 -0.08 5.86 37.16 0.22 0.14 15 18 Cl -0.23 -3.76 28.35 -51.86 -1.47 -5.23 15 19 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 20 H 0.10 2.65 5.97 -51.93 -0.31 2.34 15 21 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.08 1.50 8.06 -52.48 -0.42 1.08 15 23 H 0.08 1.44 8.06 -52.49 -0.42 1.02 15 24 H 0.07 1.47 6.51 -51.93 -0.34 1.13 15 25 H 0.05 0.89 7.67 -51.93 -0.40 0.49 15 26 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 27 H 0.10 1.80 7.24 -51.93 -0.38 1.43 15 LS Contribution 232.01 15.07 3.50 3.50 Total: -1.00 -25.98 232.01 -7.22 -33.20 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.39 Total: -1.00 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.46 Total: -22.34 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.63 Total: -23.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -3.76 SS G_CDS: -1.47 Total: -5.23 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -25.98 -7.22 -33.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212047137.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.691 kcal (2) G-P(sol) polarization free energy of solvation -25.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds