Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99866 * 2 1 4 4 H 1.48506 * 109.46983 * 239.99482 * 3 2 1 5 5 H 1.48501 * 109.47461 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47363 * 119.99906 * 3 2 1 7 7 C 1.37876 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99700 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.81342 * 59.47462 * 9 7 2 11 11 C 1.53022 * 109.64663 * 298.94684 * 9 7 2 12 12 C 1.50065 * 110.19829 * 289.55985 * 11 9 7 13 13 C 1.29443 * 124.07980 * 343.32387 * 12 11 9 14 14 C 1.50070 * 124.07366 * 359.94620 * 13 12 11 15 15 C 1.53027 * 110.14693 * 343.13269 * 14 13 12 16 16 H 1.09001 * 109.64307 * 289.75441 * 15 14 13 17 17 C 1.52998 * 109.64311 * 169.11916 * 15 14 13 18 18 Cl 1.80304 * 109.47036 * 65.00108 * 17 15 14 19 19 H 0.97007 * 120.00502 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.36071 * 49.95801 * 11 9 7 21 21 H 1.08994 * 109.36386 * 169.68050 * 11 9 7 22 22 H 1.08004 * 117.96441 * 163.07979 * 12 11 9 23 23 H 1.08002 * 117.96781 * 180.23731 * 13 12 11 24 24 H 1.09000 * 109.35664 * 103.33988 * 14 13 12 25 25 H 1.09003 * 109.36112 * 222.92697 * 14 13 12 26 26 H 1.09003 * 109.46876 * 185.00205 * 17 15 14 27 27 H 1.09001 * 109.47208 * 305.00177 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6155 -2.5588 -0.8831 11 6 0.3892 -2.5956 1.2613 12 6 1.2584 -2.7858 2.4697 13 6 2.4961 -3.1617 2.4211 14 6 3.2345 -3.4610 1.1493 15 6 2.2443 -3.6680 0.0011 16 1 1.7070 -4.6053 0.1452 17 6 2.9992 -3.7021 -1.3292 18 17 4.0809 -5.1441 -1.3696 19 1 -0.4851 0.8401 -0.0004 20 1 -0.1925 -1.6805 1.3723 21 1 -0.2875 -3.4453 1.1723 22 1 0.8255 -2.5935 3.4403 23 1 3.0293 -3.2712 3.3539 24 1 3.8955 -2.6278 0.9107 25 1 3.8292 -4.3650 1.2809 26 1 2.2852 -3.7603 -2.1507 27 1 3.5972 -2.7964 -1.4310 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212047137.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = -29.802723 kcal Electronic energy + Delta-G solvation = -11269.976113 eV Core-core repulsion = 9245.347209 eV Total energy + Delta-G solvation = -2024.628904 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.066 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.71322 -36.66613 -34.52882 -33.08234 -30.99519 -27.71308 -26.35379 -23.32142 -21.51807 -19.43175 -17.03294 -16.79875 -16.43123 -15.37602 -15.21165 -14.65595 -13.97155 -13.70485 -13.43245 -13.26564 -12.86841 -12.74464 -12.60124 -12.32714 -11.98626 -11.52444 -11.20737 -10.91083 -10.71579 -10.52723 -10.32981 -9.50003 -8.02410 -6.11813 1.43707 1.45764 1.50947 1.51933 1.75785 2.47605 3.27731 3.97361 4.03513 4.33577 4.45889 4.67973 4.80273 4.85963 5.00068 5.07058 5.10287 5.28307 5.36583 5.50079 5.67222 5.75533 6.06964 6.18004 6.44442 6.47187 6.96221 7.54825 9.02767 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.034812 B = 0.013038 C = 0.011208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.124114 B = 2147.126372 C = 2497.545617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.052 3.948 10 H 0.002 0.998 11 C -0.088 4.088 12 C -0.143 4.143 13 C -0.165 4.165 14 C -0.065 4.065 15 C -0.082 4.082 16 H 0.062 0.938 17 C 0.000 4.000 18 Cl -0.210 7.210 19 H 0.257 0.743 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.091 0.909 23 H 0.108 0.892 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 -5.946 0.717 7.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.033 3.967 10 H 0.021 0.979 11 C -0.125 4.125 12 C -0.162 4.162 13 C -0.183 4.183 14 C -0.102 4.102 15 C -0.100 4.100 16 H 0.081 0.919 17 C -0.062 4.062 18 Cl -0.184 7.184 19 H 0.066 0.934 20 H 0.089 0.911 21 H 0.056 0.944 22 H 0.110 0.890 23 H 0.126 0.874 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.005 -5.927 0.711 7.790 hybrid contribution 0.049 1.143 0.059 1.145 sum 5.054 -4.784 0.769 7.002 Atomic orbital electron populations 1.69983 1.07036 1.26792 1.52227 1.25586 0.95402 1.01780 0.95573 0.85901 0.78527 0.80305 0.78655 1.19673 1.21737 1.20145 1.21378 0.92940 0.90965 1.48670 0.92168 1.18707 0.92571 0.92181 0.93201 0.97942 1.20443 0.97586 0.99830 0.94643 1.22064 0.96712 0.99244 0.98130 1.21983 0.95678 1.02246 0.98400 1.20305 0.96953 1.00586 0.92333 1.21421 0.96677 0.98777 0.93160 0.91915 1.24435 0.94175 0.87545 1.00094 1.98659 1.71137 1.49445 1.99130 0.93369 0.91094 0.94392 0.89042 0.87427 0.91721 0.91028 0.89220 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.36 11.39 21.45 0.24 -51.11 15 2 C 0.01 0.76 5.27 84.66 0.45 1.21 15 3 Si 0.94 42.34 29.54 68.60 2.03 44.37 15 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 15 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 7 C -0.50 -25.18 6.82 25.60 0.17 -25.00 15 8 H 0.06 2.95 5.75 -2.91 -0.02 2.93 15 9 C 0.05 2.42 2.09 -11.40 -0.02 2.39 15 10 H 0.00 0.13 8.14 -2.38 -0.02 0.11 15 11 C -0.09 -4.02 5.43 29.66 0.16 -3.86 15 12 C -0.14 -5.82 9.54 27.04 0.26 -5.56 15 13 C -0.17 -6.11 9.61 27.04 0.26 -5.85 15 14 C -0.07 -2.34 4.59 29.66 0.14 -2.20 15 15 C -0.08 -3.08 2.10 -10.65 -0.02 -3.11 15 16 H 0.06 2.31 8.12 -2.39 -0.02 2.29 15 17 C 0.00 0.00 5.86 71.98 0.42 0.42 15 18 Cl -0.21 -6.39 28.35 -2.72 -0.08 -6.47 15 19 H 0.26 13.92 8.31 -92.70 -0.77 13.15 15 20 H 0.07 3.73 5.97 -2.39 -0.01 3.72 15 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.09 3.41 8.06 -2.91 -0.02 3.38 15 23 H 0.11 3.42 8.06 -2.91 -0.02 3.40 15 24 H 0.06 2.46 6.51 -2.39 -0.02 2.45 15 25 H 0.07 2.29 7.67 -2.39 -0.02 2.27 15 26 H 0.09 2.95 8.14 -2.39 -0.02 2.93 15 27 H 0.09 3.25 7.24 -2.39 -0.02 3.23 15 Total: -1.00 -53.68 232.01 5.15 -48.53 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.14 Total: 6.24 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 1.81 Total: -41.56 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.24 Total: -51.11 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -6.39 SS G_CDS: -0.08 Total: -6.47 kcal Total: -53.68 5.15 -48.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212047137.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.729 kcal (2) G-P(sol) polarization free energy of solvation -53.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds