Wall clock time and date at job start Mon Mar 30 2020 02:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00085 * 2 1 4 4 H 1.48505 * 109.46930 * 269.99436 * 3 2 1 5 5 H 1.48498 * 109.47300 * 29.99371 * 3 2 1 6 6 H 1.48504 * 109.47251 * 149.99728 * 3 2 1 7 7 C 1.37878 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00089 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99980 * 180.02562 * 7 2 1 10 10 H 1.08992 * 109.64264 * 355.25594 * 9 7 2 11 11 C 1.53027 * 109.64171 * 234.83274 * 9 7 2 12 12 C 1.50065 * 110.14928 * 190.87959 * 11 9 7 13 13 C 1.29444 * 124.07258 * 17.13463 * 12 11 9 14 14 C 1.50068 * 124.07791 * 359.54922 * 13 12 11 15 15 C 1.52951 * 110.29999 * 16.95186 * 14 13 12 16 16 H 1.08996 * 109.43868 * 70.50973 * 15 14 13 17 17 C 1.53002 * 109.80025 * 191.11721 * 15 14 13 18 18 Cl 1.80299 * 109.46779 * 188.12459 * 17 15 14 19 19 H 0.96998 * 119.99617 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.36128 * 311.08784 * 11 9 7 21 21 H 1.09003 * 109.35504 * 70.81356 * 11 9 7 22 22 H 1.07994 * 117.96707 * 197.10937 * 12 11 9 23 23 H 1.08002 * 117.96186 * 179.53478 * 13 12 11 24 24 H 1.09004 * 109.35886 * 137.31113 * 14 13 12 25 25 H 1.08992 * 109.36323 * 257.03924 * 14 13 12 26 26 H 1.08996 * 109.47231 * 308.12002 * 17 15 14 27 27 H 1.08991 * 109.47123 * 68.12766 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8780 -0.1711 -0.0839 11 6 4.0264 -2.0244 -1.1767 12 6 5.5031 -2.2543 -1.0407 13 6 6.1632 -2.0959 0.0614 14 6 5.5459 -1.6509 1.3548 15 6 4.0266 -1.8198 1.3035 16 1 3.7788 -2.8810 1.3232 17 6 3.3861 -1.1152 2.5011 18 17 1.6296 -1.5172 2.5657 19 1 -0.4849 0.8401 -0.0004 20 1 3.5113 -2.9849 -1.1942 21 1 3.8299 -1.4920 -2.1073 22 1 6.0489 -2.5721 -1.9167 23 1 7.2244 -2.2967 0.0494 24 1 5.9493 -2.2486 2.1722 25 1 5.7813 -0.6004 1.5250 26 1 3.8690 -1.4484 3.4196 27 1 3.5084 -0.0373 2.3965 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212047205.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:35 Heat of formation + Delta-G solvation = -6.109256 kcal Electronic energy + Delta-G solvation = -11418.590137 eV Core-core repulsion = 9394.988659 eV Total energy + Delta-G solvation = -2023.601478 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.066 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.13227 -34.57043 -32.66342 -31.45998 -30.10360 -25.84866 -24.63722 -21.44857 -19.80826 -17.66437 -16.45135 -15.12324 -14.17063 -13.90180 -13.40569 -12.97630 -12.69663 -12.32631 -11.96087 -11.69744 -11.32688 -10.89851 -10.82284 -10.56287 -9.76413 -9.56077 -9.34978 -9.22445 -9.03186 -8.63444 -8.37140 -7.93647 -5.87980 -3.72453 2.83295 3.33056 3.40496 3.43996 3.57893 4.54668 5.28451 5.37107 5.51352 5.65846 5.86287 5.96966 6.11399 6.18862 6.26998 6.30646 6.44588 6.67650 6.75786 6.86388 7.19142 7.35987 7.41601 7.56362 7.91202 8.70154 9.18880 9.76021 11.26978 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.018450 C = 0.014844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.000078 B = 1517.221067 C = 1885.880892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.083 3.917 3 Si 0.858 3.142 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.485 4.485 8 H 0.077 0.923 9 C 0.013 3.987 10 H 0.038 0.962 11 C -0.084 4.084 12 C -0.144 4.144 13 C -0.172 4.172 14 C -0.085 4.085 15 C -0.090 4.090 16 H 0.070 0.930 17 C -0.017 4.017 18 Cl -0.145 7.145 19 H 0.258 0.742 20 H 0.068 0.932 21 H 0.061 0.939 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.527 -2.030 2.763 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.118 4.118 3 Si 0.687 3.313 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.523 4.523 8 H 0.095 0.905 9 C -0.006 4.006 10 H 0.057 0.943 11 C -0.122 4.122 12 C -0.163 4.163 13 C -0.190 4.190 14 C -0.123 4.123 15 C -0.110 4.110 16 H 0.088 0.912 17 C -0.081 4.081 18 Cl -0.118 7.118 19 H 0.068 0.932 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.216 -1.934 2.769 9.815 hybrid contribution 0.548 1.009 -0.032 1.148 sum 9.763 -0.925 2.737 10.182 Atomic orbital electron populations 1.69859 1.05999 1.26037 1.51562 1.24830 0.94373 0.97594 0.94978 0.87203 0.80240 0.85544 0.78334 1.20780 1.21810 1.19208 1.20815 0.87968 0.94650 1.48824 0.90529 1.19398 0.97121 0.94795 0.89239 0.94345 1.20698 0.89948 1.00912 1.00606 1.22448 0.98024 0.98966 0.96813 1.21852 0.98457 1.03398 0.95287 1.20472 0.96201 1.00315 0.95268 1.21596 0.91643 1.00427 0.97291 0.91169 1.23923 0.84110 1.01460 0.98584 1.98734 1.19280 1.95095 1.98732 0.93209 0.91386 0.92072 0.89388 0.89207 0.92365 0.91891 0.91874 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.96 55.43 0.77 -25.90 15 2 C 0.08 2.30 4.46 -17.82 -0.08 2.22 15 3 Si 0.86 21.28 26.77 -169.99 -4.55 16.73 15 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 6 H -0.27 -6.24 5.86 56.52 0.33 -5.91 15 7 C -0.48 -12.76 5.54 -34.44 -0.19 -12.95 15 8 H 0.08 2.24 7.86 -52.48 -0.41 1.83 15 9 C 0.01 0.30 1.72 -91.55 -0.16 0.14 15 10 H 0.04 0.90 4.50 -51.93 -0.23 0.67 15 11 C -0.08 -1.69 5.43 -28.18 -0.15 -1.84 15 12 C -0.14 -2.47 9.81 -35.90 -0.35 -2.82 15 13 C -0.17 -2.77 9.81 -35.90 -0.35 -3.13 15 14 C -0.09 -1.41 5.44 -28.21 -0.15 -1.56 15 15 C -0.09 -1.77 2.07 -90.44 -0.19 -1.95 15 16 H 0.07 1.41 8.13 -51.93 -0.42 0.99 15 17 C -0.02 -0.34 5.92 37.16 0.22 -0.12 15 18 Cl -0.15 -3.30 24.77 -51.86 -1.28 -4.59 15 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.07 1.38 8.10 -51.93 -0.42 0.96 15 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.09 1.31 8.06 -52.49 -0.42 0.89 15 23 H 0.09 1.24 8.06 -52.49 -0.42 0.81 15 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.06 1.03 8.10 -51.93 -0.42 0.61 15 26 H 0.06 1.02 8.13 -51.93 -0.42 0.60 15 27 H 0.07 1.47 7.11 -51.93 -0.37 1.10 15 LS Contribution 228.38 15.07 3.44 3.44 Total: -1.00 -28.42 228.38 -6.62 -35.04 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -3.60 Total: -2.72 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.40 Total: -22.01 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.55 Total: 16.73 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -1.28 Total: -4.59 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.42 -6.62 -35.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212047205.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.930 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds